Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   DE8669_RS08165 Genome accession   NZ_CP012391
Coordinates   1620368..1621045 (+) Length   225 a.a.
NCBI ID   WP_002213447.1    Uniprot ID   Q9JZI3
Organism   Neisseria meningitidis strain DE8669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1615368..1626045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8669_RS08145 (DE8669_1529) leuD 1616173..1616814 (-) 642 WP_002219220.1 3-isopropylmalate dehydratase small subunit -
  DE8669_RS08150 (DE8669_1530) - 1616876..1617130 (-) 255 WP_002213442.1 hypothetical protein -
  DE8669_RS08155 (DE8669_1531) leuC 1617227..1618636 (-) 1410 WP_002237025.1 3-isopropylmalate dehydratase large subunit -
  DE8669_RS08160 (DE8669_1532) gshA 1618896..1620245 (+) 1350 WP_014582440.1 glutamate--cysteine ligase -
  DE8669_RS15020 - 1620219..1620341 (-) 123 WP_255294323.1 hypothetical protein -
  DE8669_RS08165 (DE8669_1533) ysxA/radC 1620368..1621045 (+) 678 WP_002213447.1 RadC family protein Machinery gene
  DE8669_RS08170 (DE8669_1534) - 1621118..1621843 (+) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  DE8669_RS15025 - 1621866..1621994 (-) 129 WP_009347251.1 hypothetical protein -
  DE8669_RS08175 (DE8669_1535) - 1621996..1623276 (+) 1281 WP_002222551.1 CAP domain-containing protein -
  DE8669_RS08180 (DE8669_1536) hflX 1623281..1624459 (+) 1179 WP_002222550.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24939.75 Da        Isoelectric Point: 5.3782

>NTDB_id=133377 DE8669_RS08165 WP_002213447.1 1620368..1621045(+) (ysxA/radC) [Neisseria meningitidis strain DE8669]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQSVCSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=133377 DE8669_RS08165 WP_002213447.1 1620368..1621045(+) (ysxA/radC) [Neisseria meningitidis strain DE8669]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCGTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATTGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTTACCTCGCAAA
GCGTCTGTTCGTTCAGACAGCTCGGGTTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JZI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378

Multiple sequence alignment