Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DE8669_RS04830 Genome accession   NZ_CP012391
Coordinates   924418..925017 (+) Length   199 a.a.
NCBI ID   WP_065826048.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE8669     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 919418..930017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8669_RS04805 (DE8669_0900) - 919681..920268 (-) 588 WP_002223431.1 superoxide dismutase -
  DE8669_RS04810 (DE8669_0901) dnaB 920432..921838 (+) 1407 WP_002225362.1 replicative DNA helicase -
  DE8669_RS04815 (DE8669_0902) pilH 922147..922815 (+) 669 WP_061696530.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DE8669_RS04820 (DE8669_0903) pilV 922845..923456 (+) 612 WP_065826063.1 type IV pilus modification protein PilV Regulator
  DE8669_RS04825 (DE8669_0904) pilJ 923453..924439 (+) 987 WP_065826047.1 PilW family protein Machinery gene
  DE8669_RS04830 (DE8669_0905) pilK 924418..925017 (+) 600 WP_065826048.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DE8669_RS04835 (DE8669_0906) pilX 925022..925495 (+) 474 WP_195182879.1 PilX family type IV pilin Machinery gene
  DE8669_RS04840 (DE8669_0907) dut 927378..927830 (+) 453 WP_002229326.1 dUTP diphosphatase -
  DE8669_RS04845 (DE8669_0908) dapC 927907..929094 (+) 1188 WP_065826050.1 succinyldiaminopimelate transaminase -
  DE8669_RS15235 - 929182..929307 (+) 126 Protein_927 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21883.68 Da        Isoelectric Point: 5.3843

>NTDB_id=133357 DE8669_RS04830 WP_065826048.1 924418..925017(+) (pilK) [Neisseria meningitidis strain DE8669]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCEKGLCTAVNVRTNTNNGNEEVFDNIVVQGKPTVEAVKRSCTANSTNLCIDNKGTEYKKGTQSVSKPPRYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=133357 DE8669_RS04830 WP_065826048.1 924418..925017(+) (pilK) [Neisseria meningitidis strain DE8669]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATACAAATAATGG
TAATGAAGAGGTTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCACTGCAAATT
CTACCAACCTGTGCATTGACAATAAAGGGACGGAATATAAGAAAGGCACGCAAAGCGTCAGCAAACCACCACGCTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.177

100

0.899

Multiple sequence alignment