Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DE8669_RS04815 Genome accession   NZ_CP012391
Coordinates   922147..922815 (+) Length   222 a.a.
NCBI ID   WP_061696530.1    Uniprot ID   -
Organism   Neisseria meningitidis strain DE8669     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 917147..927815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DE8669_RS04795 (DE8669_0898) - 917209..917541 (+) 333 WP_002227435.1 hypothetical protein -
  DE8669_RS04800 (DE8669_0899) - 917872..918381 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  DE8669_RS04805 (DE8669_0900) - 919681..920268 (-) 588 WP_002223431.1 superoxide dismutase -
  DE8669_RS04810 (DE8669_0901) dnaB 920432..921838 (+) 1407 WP_002225362.1 replicative DNA helicase -
  DE8669_RS04815 (DE8669_0902) pilH 922147..922815 (+) 669 WP_061696530.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DE8669_RS04820 (DE8669_0903) pilV 922845..923456 (+) 612 WP_065826063.1 type IV pilus modification protein PilV Regulator
  DE8669_RS04825 (DE8669_0904) pilJ 923453..924439 (+) 987 WP_065826047.1 PilW family protein Machinery gene
  DE8669_RS04830 (DE8669_0905) pilK 924418..925017 (+) 600 WP_065826048.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DE8669_RS04835 (DE8669_0906) pilX 925022..925495 (+) 474 WP_195182879.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24837.30 Da        Isoelectric Point: 9.5824

>NTDB_id=133354 DE8669_RS04815 WP_061696530.1 922147..922815(+) (pilH) [Neisseria meningitidis strain DE8669]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTAN
NKCDSGKKEQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGKTQPTADRVVWTFNQNGTFGYTN
DQHLTSQSSFSYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=133354 DE8669_RS04815 WP_061696530.1 922147..922815(+) (pilH) [Neisseria meningitidis strain DE8669]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGGCCAAC
AATAAATGTGACTCCGGCAAGAAGGAGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTAAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAC
GACCAGCATCTTACAAGCCAATCCAGCTTTTCTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

84.163

99.55

0.838