Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   PN96_RS01380 Genome accession   NZ_CP009977
Coordinates   268098..268712 (-) Length   204 a.a.
NCBI ID   WP_020333941.1    Uniprot ID   A0AAN0Y4A1
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 263098..273712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PN96_RS01370 (PN96_01340) aceF 264390..266279 (+) 1890 WP_020333942.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  PN96_RS01375 (PN96_01345) lpdA 266546..267973 (+) 1428 WP_014232944.1 dihydrolipoyl dehydrogenase -
  PN96_RS01380 (PN96_01350) opaR 268098..268712 (-) 615 WP_020333941.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  PN96_RS01385 (PN96_01355) hpt 269030..269560 (+) 531 WP_014232942.1 hypoxanthine phosphoribosyltransferase -
  PN96_RS01390 (PN96_01360) can 269649..270317 (-) 669 WP_014232941.1 carbonate dehydratase -
  PN96_RS01395 (PN96_01365) - 270597..272267 (+) 1671 WP_014232940.1 SulP family inorganic anion transporter -
  PN96_RS01400 (PN96_01370) - 272574..273485 (+) 912 WP_014232939.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23655.95 Da        Isoelectric Point: 6.3780

>NTDB_id=133320 PN96_RS01380 WP_020333941.1 268098..268712(-) (opaR) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MDSIAKRARTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARDNIANITSAMIELVNQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEICNTHQPE
HLTNLFHGICYSLFVQANRFKGEDELKNLVSSYLDMLCIYDRNQ

Nucleotide


Download         Length: 615 bp        

>NTDB_id=133320 PN96_RS01380 WP_020333941.1 268098..268712(-) (opaR) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGGACTCAATTGCAAAGAGAGCCCGTACTAGGCTTTCCCCTATTAAGCGTAAACAACAACTCATGGAAATCGCGTTGGA
AGTATTTGCGCGTCGCGGTATTGGCCGCGGTGGTCATGCGGATATCGCTGAAATCGCACAGGTTTCTGTTGCTACCGTTT
TTAACTACTTCCCAACTCGCGAAGATCTCGTTGATGAAGTGTTGAACCACGTTGTACGTCAGTTCTCGAACTTCCTTTCA
GATAACATCGATTTAGACCTACACGCTCGTGACAATATTGCGAATATTACCAGCGCAATGATTGAGTTAGTCAATCAAGA
TTGCCACTGGCTGAAAGTATGGTTTGAGTGGAGCGCATCGACACGCGACGAAGTTTGGCCACTATTCGTGTCAACCAACC
GCACCAACCAGCTGTTGGTACAGAACATGTTTATCAAAGCAATTGAGCGTGGTGAAATCTGTAACACGCATCAACCAGAA
CATTTGACTAACTTGTTCCACGGCATTTGCTACTCACTGTTTGTACAAGCAAACCGTTTTAAGGGTGAAGATGAGCTGAA
AAACCTCGTAAGTTCATACCTTGATATGCTTTGTATTTACGATCGCAATCAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

92.079

99.02

0.912
  hapR Vibrio cholerae C6706

71.717

97.059

0.696
  hapR Vibrio cholerae strain A1552

71.717

97.059

0.696

Multiple sequence alignment