Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AKO64_RS14755 Genome accession   NZ_CP012380
Coordinates   2851021..2851758 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain WAT     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2846021..2856758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKO64_RS14740 (AKO64_2781) clpC 2846475..2849048 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AKO64_RS14745 (AKO64_2782) yfiH 2849178..2849909 (-) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  AKO64_RS14750 (AKO64_2783) rluD 2849906..2850886 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AKO64_RS14755 (AKO64_2784) comL 2851021..2851758 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AKO64_RS14765 (AKO64_2785) raiA 2852029..2852370 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AKO64_RS25390 pheL 2852474..2852521 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  AKO64_RS14770 (AKO64_2786) pheA 2852620..2853780 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  AKO64_RS14775 (AKO64_2787) tyrA 2853823..2854944 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AKO64_RS14780 (AKO64_2788) aroF 2854955..2856025 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AKO64_RS14785 (AKO64_2789) yfiL 2856235..2856600 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=133281 AKO64_RS14755 WP_000197686.1 2851021..2851758(+) (comL) [Escherichia coli strain WAT]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=133281 AKO64_RS14755 WP_000197686.1 2851021..2851758(+) (comL) [Escherichia coli strain WAT]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376