Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BF28_RS10100 Genome accession   NZ_CP009968
Coordinates   1407817..1409556 (+) Length   579 a.a.
NCBI ID   WP_000947757.1    Uniprot ID   -
Organism   Bacillus cereus E33L     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1402817..1414556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF28_RS10080 (BF28_1497) ispA 1403030..1403920 (+) 891 WP_000150355.1 (2E,6E)-farnesyl diphosphate synthase -
  BF28_RS10085 (BF28_1498) dxs 1404222..1406114 (+) 1893 WP_000366447.1 1-deoxy-D-xylulose-5-phosphate synthase -
  BF28_RS10090 (BF28_1499) - 1406118..1406957 (+) 840 WP_001274742.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  BF28_RS10095 (BF28_1500) argR 1407100..1407549 (+) 450 WP_001032581.1 arginine repressor ArgR -
  BF28_RS10100 (BF28_1501) recN 1407817..1409556 (+) 1740 WP_000947757.1 DNA repair protein RecN Machinery gene
  BF28_RS10105 (BF28_1502) spoIVB 1409675..1410973 (+) 1299 WP_002054681.1 SpoIVB peptidase -
  BF28_RS10110 (BF28_1503) spo0A 1411261..1412055 (+) 795 WP_003161566.1 sporulation transcription factor Spo0A Regulator
  BF28_RS31180 (BF28_1504) - 1412632..1413927 (+) 1296 WP_000192127.1 WXG100 family type VII secretion target -
  BF28_RS10125 (BF28_1505) - 1413911..1414525 (+) 615 WP_000849726.1 hypothetical protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65774.84 Da        Isoelectric Point: 4.8574

>NTDB_id=133228 BF28_RS10100 WP_000947757.1 1407817..1409556(+) (recN) [Bacillus cereus E33L]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENNLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRII
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=133228 BF28_RS10100 WP_000947757.1 1407817..1409556(+) (recN) [Bacillus cereus E33L]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGCGGTTCGGCAGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAGGGGCTATTTTATGTAGAAGATGATAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGCGTATG
TCGTGTAAATGGAAAACTAGTTACCCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGACAGCACG
AAACGCAAGACTTAATGAATGAAGAACGTCATCTATTTATGCTCGATCATTTTGATGGAGAGCGTATCGTTAAACAATTG
GATATATACCAAAACGTATACGCTGACTATGAGAAGTTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCGCATCGCTTAGATTTAATTCAATTCCAGCATGAAGAAATCCGTAAGGCGGATTTAAAGATGGATGAAGAAAATAACT
TAACTGAAGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCATTAGGTGACGCATATCGCTCGTTAAGTGCT
GATGGACAAGGGTTAGATAATGTAAGAAGTGCAATGGGACAAATGGAGAGTATTACACATTTAGACGAAGTGTACCAAGA
AAATCATGATTCCATTGCAAATAGCTATTACCTATTAGAAGAAGTTGCATATCAACTAAGAGAAAAACTCGATATGATGG
AATATGACCCAAATCGTTTAGACGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATATTAGCGTATGCTGATAAAATTGAACAAGAGATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATCATA
AAGCGAGAAGGAAATGCGGAAGAGCCTCTTGTGGAGGGAGCACCGGTAAGGCTTACAGCGGACGGTTATGATCATGTGGA
ATTTTATATTTCAACCAATCCAGGTGAGCCGCTAAAACCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTGTCCCGTATTA
TTTTAGCTTTAAAAAGTATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGTCGGGTCGCACAGGCTATTGCGGAAAAAATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATCCGAAAACAAGTAGCGAATGATCGAACAATTACATCCGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601

Multiple sequence alignment