Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | LT85_RS21920 | Genome accession | NZ_CP009962 |
| Coordinates | 4971742..4973208 (-) | Length | 488 a.a. |
| NCBI ID | WP_038493188.1 | Uniprot ID | A0A0A1FIW2 |
| Organism | Collimonas arenae strain Cal35 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 4966742..4978208
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT85_RS21910 (LT85_4429) | - | 4967540..4970464 (-) | 2925 | WP_038493184.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| LT85_RS21915 (LT85_4430) | ampD | 4970950..4971588 (-) | 639 | WP_038493186.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| LT85_RS21920 (LT85_4431) | pilR | 4971742..4973208 (-) | 1467 | WP_038493188.1 | sigma-54 dependent transcriptional regulator | Regulator |
| LT85_RS21925 (LT85_4432) | - | 4973233..4974978 (-) | 1746 | WP_038493190.1 | PAS domain-containing sensor histidine kinase | - |
| LT85_RS21930 | - | 4975076..4975348 (-) | 273 | WP_038493192.1 | PP0621 family protein | - |
| LT85_RS21935 (LT85_4434) | - | 4975345..4976154 (-) | 810 | WP_038493195.1 | inner membrane protein YpjD | - |
| LT85_RS21940 (LT85_4435) | ffh | 4976483..4977850 (+) | 1368 | WP_038493197.1 | signal recognition particle protein | - |
Sequence
Protein
Download Length: 488 a.a. Molecular weight: 52515.23 Da Isoelectric Point: 5.1501
>NTDB_id=133200 LT85_RS21920 WP_038493188.1 4971742..4973208(-) (pilR) [Collimonas arenae strain Cal35]
MTSPRILVVDDEAHLRELLEIALVKMGLDVDSADSLSAARSHLAANDYALVLTDMRLPDGLGIELVREVTNGDKVIPIAV
ITAYGSADNAVVALKAGAFDYLSKPVALDQLRLMVQSALRIGKPADSPRQPGDAKARSNTSLRLIGQSAAMQELRTQIVR
LARSMAPVAITGESGSGKELAARDIHALSPRADKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAADDREGFFQAANGGTL
LLDEVADLPLAMQVKLLRAIQERRVRKVGATVEEPVDVRLISATHQNLAECVESGRFRQDLYYRLNVIELKLPPLRERLD
DLGLLIDTVLGRLAAFAPQAVPVTLTPAAMAVLCSYAFPGNVRELENILERALAFANDGVIEVADLGLKGGGNGRPLESQ
GMGDGEADAGLATLPASFAPVAATTASLLSGSELPPSLPDYLDDIERDVIRRALTRTHFNRTKAADLLGISFRQLRYRMQ
RLSIHEQD
MTSPRILVVDDEAHLRELLEIALVKMGLDVDSADSLSAARSHLAANDYALVLTDMRLPDGLGIELVREVTNGDKVIPIAV
ITAYGSADNAVVALKAGAFDYLSKPVALDQLRLMVQSALRIGKPADSPRQPGDAKARSNTSLRLIGQSAAMQELRTQIVR
LARSMAPVAITGESGSGKELAARDIHALSPRADKPFVAVNCGAIPEALMEAEFFGYRKGAFTGAADDREGFFQAANGGTL
LLDEVADLPLAMQVKLLRAIQERRVRKVGATVEEPVDVRLISATHQNLAECVESGRFRQDLYYRLNVIELKLPPLRERLD
DLGLLIDTVLGRLAAFAPQAVPVTLTPAAMAVLCSYAFPGNVRELENILERALAFANDGVIEVADLGLKGGGNGRPLESQ
GMGDGEADAGLATLPASFAPVAATTASLLSGSELPPSLPDYLDDIERDVIRRALTRTHFNRTKAADLLGISFRQLRYRMQ
RLSIHEQD
Nucleotide
Download Length: 1467 bp
>NTDB_id=133200 LT85_RS21920 WP_038493188.1 4971742..4973208(-) (pilR) [Collimonas arenae strain Cal35]
ATGACTTCACCCCGTATTCTGGTCGTTGACGACGAAGCCCATCTGCGCGAATTGTTAGAGATCGCATTGGTCAAGATGGG
GCTGGATGTCGACAGTGCCGACAGCCTGTCCGCGGCGCGCAGCCATCTCGCAGCCAACGACTATGCACTGGTCCTGACCG
ATATGCGGTTGCCGGACGGTCTCGGCATTGAGCTGGTGCGCGAAGTCACCAATGGCGACAAGGTGATCCCGATCGCCGTG
ATTACCGCCTATGGCAGCGCTGACAATGCCGTGGTCGCATTGAAAGCCGGCGCCTTCGACTATTTGTCGAAACCGGTAGC
GTTAGATCAGCTACGTTTGATGGTGCAGTCGGCATTGCGTATCGGTAAGCCGGCAGATAGTCCGCGCCAGCCAGGCGATG
CCAAAGCACGTAGCAATACCTCATTACGCCTGATCGGCCAATCTGCCGCGATGCAGGAATTGCGGACCCAGATCGTGCGT
CTGGCGCGCAGCATGGCGCCGGTAGCCATTACCGGCGAATCCGGCAGCGGCAAGGAGTTGGCGGCGCGCGATATTCACGC
GCTCAGCCCGCGCGCCGACAAGCCGTTTGTAGCGGTCAATTGCGGCGCCATCCCGGAAGCTCTGATGGAGGCTGAATTTT
TCGGCTACCGGAAAGGCGCGTTTACCGGCGCCGCCGATGACCGCGAAGGATTTTTCCAGGCTGCCAACGGCGGCACGCTG
TTGCTGGACGAGGTTGCCGATCTGCCGCTGGCGATGCAGGTCAAGCTATTGCGGGCGATTCAAGAGCGGCGCGTGCGCAA
GGTTGGGGCAACGGTGGAAGAGCCGGTGGATGTCCGTTTGATCAGCGCTACGCACCAGAATCTGGCCGAGTGTGTCGAAT
CAGGTAGATTTCGCCAGGATTTGTACTATCGTTTGAATGTTATCGAATTAAAATTGCCGCCGCTGCGTGAACGTCTGGAT
GATCTTGGTTTACTCATCGATACGGTGTTAGGACGCTTGGCGGCGTTTGCACCGCAGGCGGTGCCGGTGACGTTGACGCC
GGCGGCCATGGCGGTGTTGTGTTCCTATGCGTTTCCGGGAAATGTGCGTGAACTGGAAAATATTCTGGAGCGTGCATTGG
CGTTTGCCAATGATGGCGTCATCGAGGTCGCAGATCTCGGCTTGAAGGGGGGCGGCAATGGCCGTCCGTTAGAGTCTCAA
GGCATGGGTGACGGTGAGGCGGATGCCGGCCTGGCAACTTTGCCGGCAAGCTTCGCACCGGTTGCGGCAACTACGGCATC
GTTATTAAGCGGATCCGAATTACCGCCGTCGCTGCCGGATTACCTGGATGATATTGAACGCGATGTCATCCGGCGCGCAC
TGACGCGCACGCATTTTAACCGGACCAAGGCAGCCGATCTGCTGGGTATCAGCTTTCGCCAGCTACGCTATCGGATGCAG
CGTTTATCGATTCACGAACAGGATTAG
ATGACTTCACCCCGTATTCTGGTCGTTGACGACGAAGCCCATCTGCGCGAATTGTTAGAGATCGCATTGGTCAAGATGGG
GCTGGATGTCGACAGTGCCGACAGCCTGTCCGCGGCGCGCAGCCATCTCGCAGCCAACGACTATGCACTGGTCCTGACCG
ATATGCGGTTGCCGGACGGTCTCGGCATTGAGCTGGTGCGCGAAGTCACCAATGGCGACAAGGTGATCCCGATCGCCGTG
ATTACCGCCTATGGCAGCGCTGACAATGCCGTGGTCGCATTGAAAGCCGGCGCCTTCGACTATTTGTCGAAACCGGTAGC
GTTAGATCAGCTACGTTTGATGGTGCAGTCGGCATTGCGTATCGGTAAGCCGGCAGATAGTCCGCGCCAGCCAGGCGATG
CCAAAGCACGTAGCAATACCTCATTACGCCTGATCGGCCAATCTGCCGCGATGCAGGAATTGCGGACCCAGATCGTGCGT
CTGGCGCGCAGCATGGCGCCGGTAGCCATTACCGGCGAATCCGGCAGCGGCAAGGAGTTGGCGGCGCGCGATATTCACGC
GCTCAGCCCGCGCGCCGACAAGCCGTTTGTAGCGGTCAATTGCGGCGCCATCCCGGAAGCTCTGATGGAGGCTGAATTTT
TCGGCTACCGGAAAGGCGCGTTTACCGGCGCCGCCGATGACCGCGAAGGATTTTTCCAGGCTGCCAACGGCGGCACGCTG
TTGCTGGACGAGGTTGCCGATCTGCCGCTGGCGATGCAGGTCAAGCTATTGCGGGCGATTCAAGAGCGGCGCGTGCGCAA
GGTTGGGGCAACGGTGGAAGAGCCGGTGGATGTCCGTTTGATCAGCGCTACGCACCAGAATCTGGCCGAGTGTGTCGAAT
CAGGTAGATTTCGCCAGGATTTGTACTATCGTTTGAATGTTATCGAATTAAAATTGCCGCCGCTGCGTGAACGTCTGGAT
GATCTTGGTTTACTCATCGATACGGTGTTAGGACGCTTGGCGGCGTTTGCACCGCAGGCGGTGCCGGTGACGTTGACGCC
GGCGGCCATGGCGGTGTTGTGTTCCTATGCGTTTCCGGGAAATGTGCGTGAACTGGAAAATATTCTGGAGCGTGCATTGG
CGTTTGCCAATGATGGCGTCATCGAGGTCGCAGATCTCGGCTTGAAGGGGGGCGGCAATGGCCGTCCGTTAGAGTCTCAA
GGCATGGGTGACGGTGAGGCGGATGCCGGCCTGGCAACTTTGCCGGCAAGCTTCGCACCGGTTGCGGCAACTACGGCATC
GTTATTAAGCGGATCCGAATTACCGCCGTCGCTGCCGGATTACCTGGATGATATTGAACGCGATGTCATCCGGCGCGCAC
TGACGCGCACGCATTTTAACCGGACCAAGGCAGCCGATCTGCTGGGTATCAGCTTTCGCCAGCTACGCTATCGGATGCAG
CGTTTATCGATTCACGAACAGGATTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
52.165 |
99.385 |
0.518 |
| pilR | Acinetobacter baumannii strain A118 |
42.505 |
99.795 |
0.424 |