Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   AKO63_RS09965 Genome accession   NZ_CP012379
Coordinates   1912274..1913284 (-) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain PAR     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1907274..1918284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AKO63_RS09945 (AKO63_1916) mepM 1908243..1909565 (-) 1323 WP_001184045.1 murein DD-endopeptidase MepM -
  AKO63_RS09950 (AKO63_1917) znuA 1909581..1910513 (-) 933 WP_094058343.1 zinc ABC transporter substrate-binding protein ZnuA -
  AKO63_RS09955 (AKO63_1918) znuC 1910592..1911347 (+) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  AKO63_RS09960 (AKO63_1919) znuB 1911344..1912129 (+) 786 WP_000571479.1 zinc ABC transporter permease subunit ZnuB -
  AKO63_RS09965 (AKO63_1920) ruvB 1912274..1913284 (-) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  AKO63_RS09970 (AKO63_1921) ruvA 1913293..1913904 (-) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  AKO63_RS09975 yobI 1914043..1914108 (-) 66 WP_072093883.1 stress response small protein YobI -
  AKO63_RS09980 (AKO63_1922) yebB 1914179..1914781 (+) 603 WP_001024913.1 YebB family permuted papain-like enzyme -
  AKO63_RS09985 (AKO63_1923) ruvC 1914783..1915304 (-) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  AKO63_RS09990 (AKO63_1924) yebC 1915339..1916079 (-) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AKO63_RS09995 (AKO63_1925) nudB 1916108..1916560 (-) 453 WP_077393227.1 dihydroneopterin triphosphate diphosphatase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=133183 AKO63_RS09965 WP_000568519.1 1912274..1913284(-) (ruvB) [Escherichia coli strain PAR]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=133183 AKO63_RS09965 WP_000568519.1 1912274..1913284(-) (ruvB) [Escherichia coli strain PAR]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATCCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTATTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAATATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCAATGCTCACTAACCTTGAACCACA
CGATGTACTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494

Multiple sequence alignment