Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   OY17_RS19660 Genome accession   NZ_CP009938
Coordinates   4058006..4058695 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. BH072 isolate honey     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4053006..4063695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OY17_RS19625 (OY17_19625) - 4053204..4053686 (-) 483 WP_003151394.1 flagellar protein FlgN -
  OY17_RS19630 (OY17_19630) flgM 4053701..4053967 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  OY17_RS19635 (OY17_19635) - 4054037..4054456 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  OY17_RS19640 (OY17_19640) comFC 4054530..4055219 (-) 690 WP_197535984.1 ComF family protein Machinery gene
  OY17_RS19645 (OY17_19645) - 4055225..4055509 (-) 285 WP_014419011.1 competence protein ComFB -
  OY17_RS19650 (OY17_19650) comFA 4055567..4056952 (-) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  OY17_RS19655 (OY17_19655) - 4057060..4057908 (-) 849 WP_003151387.1 DegV family protein -
  OY17_RS19660 (OY17_19660) degU 4058006..4058695 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  OY17_RS19665 (OY17_19665) degS 4058772..4059935 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  OY17_RS19670 (OY17_19670) - 4060158..4060805 (+) 648 WP_007614107.1 YigZ family protein -
  OY17_RS19675 (OY17_19675) - 4060810..4062024 (+) 1215 WP_014419013.1 LCP family protein -
  OY17_RS19680 (OY17_19680) - 4062114..4063190 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=133182 OY17_RS19660 WP_003219701.1 4058006..4058695(-) (degU) [Bacillus sp. BH072 isolate honey]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=133182 OY17_RS19660 WP_003219701.1 4058006..4058695(-) (degU) [Bacillus sp. BH072 isolate honey]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTTTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGCTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment