Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AEI11_RS04875 Genome accession   NZ_CP012250
Coordinates   934240..934791 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ516CC45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 929240..939791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI11_RS04840 (AEI11_04875) - 929429..929854 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  AEI11_RS04845 (AEI11_04880) - 929919..930539 (+) 621 WP_052775996.1 nitroreductase family protein -
  AEI11_RS04850 (AEI11_04885) - 930539..931144 (+) 606 WP_052775997.1 NAD(P)H-dependent oxidoreductase -
  AEI11_RS04855 (AEI11_04890) pgsA 931269..931805 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AEI11_RS04860 (AEI11_04895) rseP 931802..932908 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  AEI11_RS04865 (AEI11_04900) - 932901..933767 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  AEI11_RS04870 (AEI11_04905) rpsF 933854..934231 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  AEI11_RS04875 (AEI11_04910) ssb 934240..934791 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  AEI11_RS04880 (AEI11_04915) rpsR 934802..935062 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AEI11_RS04885 (AEI11_04920) lon 935122..937497 (-) 2376 WP_002853487.1 endopeptidase La -
  AEI11_RS04890 (AEI11_04925) bamD 937514..938161 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  AEI11_RS04895 (AEI11_04930) fliW 938322..938711 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AEI11_RS04900 (AEI11_04935) proC 938711..939442 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI11_RS04905 (AEI11_04940) ctsT 939439..939741 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=133053 AEI11_RS04875 WP_002853013.1 934240..934791(+) (ssb) [Campylobacter jejuni strain CJ516CC45]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=133053 AEI11_RS04875 WP_002853013.1 934240..934791(+) (ssb) [Campylobacter jejuni strain CJ516CC45]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361