Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   SSAL8618_RS07445 Genome accession   NZ_CP009913
Coordinates   1642679..1643764 (-) Length   361 a.a.
NCBI ID   WP_038676507.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NCTC 8618     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1637679..1648764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL8618_RS07415 (SSAL8618_07415) - 1638042..1638860 (-) 819 WP_038676498.1 Cof-type HAD-IIB family hydrolase -
  SSAL8618_RS07420 (SSAL8618_07420) - 1638853..1639647 (-) 795 WP_038676501.1 HAD family hydrolase -
  SSAL8618_RS07425 (SSAL8618_07425) - 1639829..1640206 (+) 378 WP_022496273.1 GntR family transcriptional regulator -
  SSAL8618_RS07430 (SSAL8618_07430) - 1640211..1640909 (+) 699 WP_038676503.1 ABC transporter ATP-binding protein -
  SSAL8618_RS07435 (SSAL8618_07435) - 1640921..1641706 (+) 786 WP_021143813.1 hypothetical protein -
  SSAL8618_RS07440 (SSAL8618_07440) amiF 1641757..1642686 (-) 930 WP_038676505.1 ATP-binding cassette domain-containing protein Regulator
  SSAL8618_RS07445 (SSAL8618_07445) amiE 1642679..1643764 (-) 1086 WP_038676507.1 ABC transporter ATP-binding protein Regulator
  SSAL8618_RS07450 (SSAL8618_07450) amiD 1643774..1644700 (-) 927 WP_038676509.1 oligopeptide ABC transporter permease OppC Regulator
  SSAL8618_RS07455 (SSAL8618_07455) amiC 1644700..1646193 (-) 1494 WP_038676511.1 ABC transporter permease Regulator
  SSAL8618_RS07460 (SSAL8618_07460) amiA 1646254..1648224 (-) 1971 WP_038676513.1 peptide ABC transporter substrate-binding protein Regulator

Sequence


Protein


Download         Length: 361 a.a.        Molecular weight: 39846.54 Da        Isoelectric Point: 4.6984

>NTDB_id=132913 SSAL8618_RS07445 WP_038676507.1 1642679..1643764(-) (amiE) [Streptococcus salivarius strain NCTC 8618]
MTENKNVILSARDIVVEFAVRDRVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEENGRVASGSIDYRGQDL
TKLKSHQDWASIRGAKIATIFQDPMTSLDPIKTIGSQIVEVIVKHQGKSAKEAKKMAIDYMDKVGIPDAEKRFNEYPFQY
SGGMRQRIVIAIALACHPDVLICDEPTTALDVTIQAQIIDLLKSLKEEYGFSVIFITHDLGVVASIADKVAVMYAGEIIE
YATVEEIFYEPCHPYTWSLLSSLPQLADDKGELFSIPGTPPSLYTPVVGDAFALRSDYAMQIDFEEKAPQFQVSDTHWAK
TWLLHEDAPKVEKPAVIQNLHEKIRANMGFAHLGDEEEGNA

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=132913 SSAL8618_RS07445 WP_038676507.1 1642679..1643764(-) (amiE) [Streptococcus salivarius strain NCTC 8618]
ATGACAGAAAATAAAAATGTAATATTATCGGCTCGCGATATCGTCGTGGAATTTGCCGTTCGTGACCGTGTTTTGACAGC
CATTCGAGGAGTTTCCCTTGATTTGGTTGAAGGTGAAGTTTTAGCCTTGGTTGGTGAGTCTGGTTCAGGTAAATCAGTTT
TGACTAAGACTTTCACAGGGATGCTTGAAGAAAATGGTCGTGTCGCTAGTGGTTCGATTGATTATCGCGGTCAAGATTTG
ACTAAGCTTAAGAGTCACCAAGATTGGGCATCTATTCGTGGGGCTAAGATTGCGACTATCTTCCAAGATCCTATGACCAG
TCTTGACCCAATTAAGACTATCGGTAGCCAAATTGTTGAAGTTATTGTCAAACACCAAGGAAAATCAGCCAAAGAAGCTA
AAAAAATGGCCATTGATTACATGGACAAGGTTGGTATTCCTGATGCTGAAAAACGTTTCAATGAGTATCCTTTCCAATAC
TCTGGTGGGATGCGTCAACGTATCGTTATTGCCATTGCCTTGGCTTGTCATCCGGATGTCCTTATCTGTGACGAACCAAC
AACTGCCCTCGATGTGACCATTCAAGCTCAAATCATCGACCTCTTGAAATCACTCAAAGAGGAGTACGGTTTCTCAGTGA
TTTTCATTACCCATGACCTTGGTGTGGTAGCAAGTATCGCTGATAAGGTTGCTGTTATGTATGCTGGTGAAATCATTGAA
TACGCAACTGTTGAGGAAATTTTCTATGAGCCTTGTCACCCATACACGTGGAGCTTGCTTTCAAGCTTGCCACAGTTGGC
CGATGATAAGGGTGAGCTTTTCTCAATTCCAGGGACACCACCATCACTTTATACACCGGTTGTTGGGGATGCCTTTGCTT
TGCGTTCAGACTATGCTATGCAGATTGACTTCGAGGAAAAAGCGCCACAATTCCAAGTTTCAGATACTCACTGGGCTAAG
ACCTGGCTCTTACATGAGGATGCACCAAAAGTTGAAAAACCTGCGGTTATCCAAAATCTACATGAAAAAATCCGTGCTAA
TATGGGATTTGCACATTTAGGAGATGAGGAGGAAGGCAATGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

99.169

100

0.992

  amiE Streptococcus thermophilus LMG 18311

96.399

100

0.964

  amiE Streptococcus thermophilus LMD-9

96.399

100

0.964

  oppD Streptococcus mutans UA159

54.441

96.676

0.526


Multiple sequence alignment