Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   XFHB_RS12650 Genome accession   NZ_CP009885
Coordinates   2555930..2557342 (-) Length   470 a.a.
NCBI ID   WP_088578455.1    Uniprot ID   -
Organism   Xylella fastidiosa strain Hib4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2550930..2562342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFHB_RS12625 (XFHB_11880) - 2551107..2551553 (+) 447 WP_010894960.1 pilin -
  XFHB_RS12630 (XFHB_11885) - 2551814..2552017 (-) 204 WP_010894961.1 hypothetical protein -
  XFHB_RS12635 (XFHB_11890) - 2552850..2553284 (+) 435 WP_088578452.1 pilin -
  XFHB_RS12640 (XFHB_11895) - 2553721..2553951 (-) 231 WP_157293270.1 hypothetical protein -
  XFHB_RS12645 (XFHB_11900) pilB 2554103..2555836 (+) 1734 WP_088578454.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XFHB_RS12650 (XFHB_11905) pilR 2555930..2557342 (-) 1413 WP_088578455.1 sigma-54 dependent transcriptional regulator Regulator
  XFHB_RS12655 (XFHB_11910) - 2557528..2559141 (-) 1614 WP_088578456.1 ATP-binding protein -
  XFHB_RS12660 (XFHB_11915) sucC 2559396..2560559 (+) 1164 WP_004090371.1 ADP-forming succinate--CoA ligase subunit beta -
  XFHB_RS12665 (XFHB_11920) sucD 2560588..2561460 (+) 873 WP_046418458.1 succinate--CoA ligase subunit alpha -
  XFHB_RS15040 - 2561727..2562338 (+) 612 WP_228762741.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51384.31 Da        Isoelectric Point: 7.4201

>NTDB_id=132693 XFHB_RS12650 WP_088578455.1 2555930..2557342(-) (pilR) [Xylella fastidiosa strain Hib4]
MNQSRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVNKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESLPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERAGDLP
HLAAAIVARLAHTHGRAVPLLSPSALEALDHYSFPGNVRELENILERALALTEDDHIGVADLHLPQGSLHGQGLRLPLVP
TVLPIVPVDASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=132693 XFHB_RS12650 WP_088578455.1 2555930..2557342(-) (pilR) [Xylella fastidiosa strain Hib4]
ATGAATCAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAACAAGATTGTGCGTCATTATCCACGTACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAATGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGCGAGTCGTTACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCTCCGGTTTATATCCTTGGTGAATCCGGAGTTGGTAAGGAATTGGTTGCACGTACGATCCACGAACAGAGTGT
CCGTGCTGCTGGGGCGTTCGTGCCGGTTAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAACCAGGCTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGCT
TCCGTCACGATTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTACGTGAGCGTGCTGGCGATTTGCCG
CATCTTGCTGCAGCCATTGTAGCTCGCTTGGCGCACACGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGATCATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGTCGCGGATCTGCATCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCGGCTCCCGTTAGTGCCC
ACAGTTCTCCCGATTGTGCCTGTGGACGCATCGGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTATAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCCTTGCGTTACAAACTAAAGAAGCTGGGCATGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.422

99.787

0.583
  pilR Acinetobacter baumannii strain A118

47.158

100

0.477

Multiple sequence alignment