Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AEH96_RS05915 Genome accession   NZ_CP012235
Coordinates   1127301..1128167 (-) Length   288 a.a.
NCBI ID   WP_002858085.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ004CC45     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1122301..1133167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEH96_RS05895 (AEH96_05930) metF 1124154..1125002 (+) 849 WP_002859283.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  AEH96_RS05900 (AEH96_05935) - 1125024..1125215 (-) 192 WP_002852856.1 membrane protein -
  AEH96_RS05905 (AEH96_05940) atpB 1125212..1125892 (-) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  AEH96_RS05910 (AEH96_05945) radA 1125961..1127301 (-) 1341 WP_002866213.1 DNA repair protein RadA Machinery gene
  AEH96_RS05915 (AEH96_05950) pilA 1127301..1128167 (-) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  AEH96_RS05920 (AEH96_05955) - 1128167..1128724 (-) 558 WP_002866214.1 TlpA family protein disulfide reductase -
  AEH96_RS05925 (AEH96_05960) - 1128807..1129433 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  AEH96_RS05930 (AEH96_05965) rny 1129354..1130907 (+) 1554 WP_002853829.1 ribonuclease Y -
  AEH96_RS05935 (AEH96_05970) - 1130916..1131473 (+) 558 WP_002866215.1 DedA family protein -
  AEH96_RS05940 (AEH96_05975) - 1131473..1132732 (+) 1260 WP_002877089.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32022.00 Da        Isoelectric Point: 5.5179

>NTDB_id=132691 AEH96_RS05915 WP_002858085.1 1127301..1128167(-) (pilA) [Campylobacter jejuni strain CJ004CC45]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=132691 AEH96_RS05915 WP_002858085.1 1127301..1128167(-) (pilA) [Campylobacter jejuni strain CJ004CC45]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAACAAAAAAATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGGGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATTACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTACAAGAATTTAATGCAAGTGCTTACTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437

Multiple sequence alignment