Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AEH96_RS05910 Genome accession   NZ_CP012235
Coordinates   1125961..1127301 (-) Length   446 a.a.
NCBI ID   WP_002866213.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ004CC45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1120961..1132301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEH96_RS05885 (AEH96_05920) - 1121098..1121868 (+) 771 WP_002877094.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  AEH96_RS05890 (AEH96_05925) metE 1121880..1124144 (+) 2265 WP_002866211.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AEH96_RS05895 (AEH96_05930) metF 1124154..1125002 (+) 849 WP_002859283.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  AEH96_RS05900 (AEH96_05935) - 1125024..1125215 (-) 192 WP_002852856.1 membrane protein -
  AEH96_RS05905 (AEH96_05940) atpB 1125212..1125892 (-) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  AEH96_RS05910 (AEH96_05945) radA 1125961..1127301 (-) 1341 WP_002866213.1 DNA repair protein RadA Machinery gene
  AEH96_RS05915 (AEH96_05950) pilA 1127301..1128167 (-) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  AEH96_RS05920 (AEH96_05955) - 1128167..1128724 (-) 558 WP_002866214.1 TlpA family protein disulfide reductase -
  AEH96_RS05925 (AEH96_05960) - 1128807..1129433 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  AEH96_RS05930 (AEH96_05965) rny 1129354..1130907 (+) 1554 WP_002853829.1 ribonuclease Y -
  AEH96_RS05935 (AEH96_05970) - 1130916..1131473 (+) 558 WP_002866215.1 DedA family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49066.99 Da        Isoelectric Point: 6.9288

>NTDB_id=132690 AEH96_RS05910 WP_002866213.1 1125961..1127301(-) (radA) [Campylobacter jejuni strain CJ004CC45]
MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVLKELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKDYSILIIDSIQTLYSNKITSVAGSITQVREITFELMRVSKAYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAKDLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=132690 AEH96_RS05910 WP_002866213.1 1125961..1127301(-) (radA) [Campylobacter jejuni strain CJ004CC45]
ATGGCAAAAAATAAAGCACTTTTTGAATGTCAAGCTTGTGGAAATCAACAAAGCAAATGGCTTGGAAAATGTCCTGATTG
TGGAGCTTGGGATAGTTTTGTAGAATTAAAAGCTGAGCAAATTAAAGTTTTAAAAGAGCTTGCGCAAGTTAGTATGAAAA
CAAGTGAGGCTGTTTGTATTGAAGATGTGGAGTTAGAACATTTTACAAGATACAGCACAGATGATAATGAGCTTGATTTG
GTTTTAGGCGGAGGGCTTGTTGAAGGTTCTTTAGTGCTTATAGGCGGAAGTCCAGGTGTGGGAAAATCTACACTTTTGTT
AAAAATTGCTTCAAATTTAGCTAAACAGGGTAAAAAAGTGCTTTATGTCAGTGGCGAAGAAAGTAAAGCTCAGATTAAAT
TAAGAGCTGATCGTCTTGAGGCTAATACTCCGAATTTATTTTTACTTACTGAACTTTGCCTTGAAAATATTTTAGAAGAA
TTGCACAAAAAAGATTATAGCATTCTTATCATTGATTCTATACAAACTTTATATTCAAATAAAATTACTTCAGTAGCAGG
AAGCATCACTCAAGTGCGTGAGATTACTTTTGAACTTATGCGTGTGAGTAAGGCTTATAATATCAGTACTTTTATCATAG
GGCATATTACTAAAGAAGGTGCTATAGCAGGGCCTAGGGTTCTTGAGCATATGGTAGATGTGGTGCTTTATTTTGAAGGA
GATGCCACTAAAGAAATCAGACTTTTAAGAGGCTTTAAAAATCGTTTTGGTGGAACGAATGAAGTAGGTATTTTTGAGAT
GACTGCTAAGGGTTTGATCAGTGCAAAAGATTTGGCAAATCGTTTTTTTACTCGTGGAAAGGCTATTTCAGGAAGTGCTT
TAGGTGTTGTGATGGAAGGATCTCGTGCCTTGGTTTTAGAAGTTCAAGCTTTAGTGTGCGAAAGTTCTTATCCAAAACGC
AGCGCTACAGGATATGAAAAAAATCGCTTAGATATGCTTTTGGCTTTGCTTGAAAGAAAACTTGAAATTCCTTTAGGGCA
TTATGATGTATTTGTAAATATTAGCGGCGGAGTAAAAGTAAGTGAAACTGCTGCGGATTTGGCTGTGGTTGCTGCGATTA
TTTCAAGTTTTAAAAATCGCCCTTTGAGCAAAGATAGTATTTTTATAGGGGAGCTTAGTTTAAATGGAGAAATTAGAGAG
GTTTTTAGCCTTGATACGCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCCATTGTTCCTTCTAAGCCTTTGGA
AGATATAGGGCTTAAGTGTTTTGTTGCTAAAGAACTTTCGCAAGTTTTAGAATGGATGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

46.309

100

0.464
  radA Streptococcus pneumoniae Rx1

46.309

100

0.464
  radA Streptococcus pneumoniae D39

46.309

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.309

100

0.464
  radA Streptococcus mitis NCTC 12261

46.292

99.776

0.462
  radA Streptococcus mitis SK321

46.292

99.776

0.462
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.437

97.534

0.453