Detailed information NTG0132558

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FORC4_RS12360
• Genome accession: NZ_CP009847
• Coordinates: 2713831..2714700 (+)
• Length: 289 a.a.
• NCBI ID: WP_057619578.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain FORC_004
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2708831..2719700

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC4_RS12340 (FORC4_2390)	nadC	2709218..2710105 (+)	888	WP_025547616.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FORC4_RS12345 (FORC4_2391)	-	2710369..2710827 (+)	459	WP_025547614.1	pilin	-
FORC4_RS12350 (FORC4_2392)	pilB	2710833..2712518 (+)	1686	WP_057619577.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FORC4_RS12355 (FORC4_2393)	pilC	2712543..2713766 (+)	1224	WP_005462561.1	type II secretion system F family protein	Machinery gene
FORC4_RS12360 (FORC4_2394)	pilD	2713831..2714700 (+)	870	WP_057619578.1	prepilin peptidase	Machinery gene
FORC4_RS12365 (FORC4_2395)	coaE	2714701..2715315 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
FORC4_RS12370 (FORC4_2396)	zapD	2715343..2716083 (+)	741	WP_015297254.1	cell division protein ZapD	-
FORC4_RS12375 (FORC4_2397)	yacG	2716152..2716346 (+)	195	WP_031845920.1	DNA gyrase inhibitor YacG	-
FORC4_RS12380 (FORC4_2398)	rplS	2716668..2717021 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
FORC4_RS12385 (FORC4_2399)	trmD	2717063..2717806 (-)	744	WP_005446247.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FORC4_RS12390 (FORC4_2400)	rimM	2717834..2718382 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
FORC4_RS12395 (FORC4_2401)	rpsP	2718411..2718659 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32421.44 Da
• Isoelectric Point: 6.4652

>NTDB_id=132558 FORC4_RS12360 WP_057619578.1 2713831..2714700(+) (pilD) [Vibrio parahaemolyticus strain FORC_004]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIQPPQEVLTLSEPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSIVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=132558 FORC4_RS12360 WP_057619578.1 2713831..2714700(+) (pilD) [Vibrio parahaemolyticus strain FORC_004]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTCAGCCACCTCAAGAGGTTTTGACATTAAGCGAGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGTTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCATCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCGATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	51.661	93.772	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446