Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AEI12_RS04955 Genome accession   NZ_CP012230
Coordinates   950740..951291 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ517CC45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 945740..956291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI12_RS04920 (AEI12_04965) - 945930..946355 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  AEI12_RS04925 (AEI12_04970) - 946420..947039 (+) 620 Protein_962 nitroreductase family protein -
  AEI12_RS04930 (AEI12_04975) - 947039..947644 (+) 606 WP_022552319.1 NAD(P)H-dependent oxidoreductase -
  AEI12_RS04935 (AEI12_04980) pgsA 947769..948305 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AEI12_RS04940 (AEI12_04985) rseP 948302..949408 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  AEI12_RS04945 (AEI12_04990) - 949401..950267 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  AEI12_RS04950 (AEI12_04995) rpsF 950354..950731 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  AEI12_RS04955 (AEI12_05000) ssb 950740..951291 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  AEI12_RS04960 (AEI12_05005) rpsR 951302..951562 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AEI12_RS04965 (AEI12_05010) lon 951622..953997 (-) 2376 WP_002853487.1 endopeptidase La -
  AEI12_RS04970 (AEI12_05015) bamD 954014..954661 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  AEI12_RS04975 (AEI12_05020) fliW 954822..955211 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AEI12_RS04980 (AEI12_05025) proC 955211..955942 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI12_RS04985 (AEI12_05030) ctsT 955939..956241 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=132499 AEI12_RS04955 WP_002853013.1 950740..951291(+) (ssb) [Campylobacter jejuni strain CJ517CC45]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=132499 AEI12_RS04955 WP_002853013.1 950740..951291(+) (ssb) [Campylobacter jejuni strain CJ517CC45]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361