Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   XFC3_RS11430 Genome accession   NZ_CP009829
Coordinates   2488268..2489680 (-) Length   470 a.a.
NCBI ID   WP_031338065.1    Uniprot ID   -
Organism   Xylella fastidiosa strain 3124     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2483268..2494680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XFC3_RS11410 (XFC3_11520) - 2483396..2483842 (+) 447 WP_010894960.1 pilin -
  XFC3_RS11415 (XFC3_11530) - 2485144..2485611 (+) 468 WP_023907060.1 pilin -
  XFC3_RS11420 (XFC3_11535) - 2486059..2486289 (-) 231 WP_010894964.1 hypothetical protein -
  XFC3_RS11425 (XFC3_11540) pilB 2486441..2488174 (+) 1734 WP_010894965.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XFC3_RS11430 (XFC3_11545) pilR 2488268..2489680 (-) 1413 WP_031338065.1 sigma-54 dependent transcriptional regulator Regulator
  XFC3_RS11435 (XFC3_11550) - 2489866..2491481 (-) 1616 Protein_2262 ATP-binding protein -
  XFC3_RS11440 (XFC3_11560) sucC 2491731..2492894 (+) 1164 WP_010894968.1 ADP-forming succinate--CoA ligase subunit beta -
  XFC3_RS11445 (XFC3_11565) sucD 2492923..2493795 (+) 873 WP_010894969.1 succinate--CoA ligase subunit alpha -
  XFC3_RS11450 (XFC3_11570) - 2494082..2494666 (+) 585 WP_229716517.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 51325.24 Da        Isoelectric Point: 7.2157

>NTDB_id=132465 XFC3_RS11430 WP_031338065.1 2488268..2489680(-) (pilR) [Xylella fastidiosa strain 3124]
MNQSRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVNKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESLPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERAGDLP
HLAAAIVARLAHTHGRAVPLLSPSALEALDHYSFPGNVRELENILERALALTEDDHIGVADLHLPQGSLHGQGLPLPLVP
TVLPIVPVDASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=132465 XFC3_RS11430 WP_031338065.1 2488268..2489680(-) (pilR) [Xylella fastidiosa strain 3124]
ATGAATCAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAACAAGATTGTGCGTCATTATCCACGTACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAATGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGCGAGTCGTTACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCTCCGGTTTATATCCTTGGTGAATCCGGAGTTGGTAAGGAATTGGTTGCACGTACGATCCACGAACAGAGTGT
CCGTGCTGCTGGGGCGTTCGTGCCGGTTAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAACCAGGCTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGCT
TCCGTCACGATTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTACGTGAGCGTGCTGGCGATTTGCCG
CATCTTGCTGCAGCCATTGTAGCTCGCTTGGCGCACACGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGATCATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGTCGCGGATCTGCATCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGTTCTCCCGATTGTGCCTGTGGACGCATCGGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTATAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCCTTGCGTTACAAACTAAAGAAGCTGGGCATGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.422

99.787

0.583
  pilR Acinetobacter baumannii strain A118

47.269

100

0.479

Multiple sequence alignment