Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | XFPR_RS10935 | Genome accession | NZ_CP009826 |
| Coordinates | 2394007..2395419 (-) | Length | 470 a.a. |
| NCBI ID | WP_031337107.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa strain Pr8x | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2389007..2400419
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XFPR_RS10915 (XFPR_10860) | - | 2389163..2389609 (+) | 447 | WP_023908104.1 | pilin | - |
| XFPR_RS10920 (XFPR_10865) | - | 2390914..2391360 (+) | 447 | WP_010894963.1 | pilin | - |
| XFPR_RS10925 (XFPR_10870) | - | 2391798..2392028 (-) | 231 | WP_010894964.1 | hypothetical protein | - |
| XFPR_RS10930 (XFPR_10875) | pilB | 2392180..2393913 (+) | 1734 | WP_010894965.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| XFPR_RS10935 (XFPR_10880) | pilR | 2394007..2395419 (-) | 1413 | WP_031337107.1 | sigma-54 dependent transcriptional regulator | Regulator |
| XFPR_RS10940 (XFPR_10885) | - | 2395605..2397215 (-) | 1611 | WP_023908106.1 | ATP-binding protein | - |
| XFPR_RS10945 (XFPR_10895) | sucC | 2397465..2398628 (+) | 1164 | WP_010894968.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| XFPR_RS10950 (XFPR_10900) | sucD | 2398657..2399529 (+) | 873 | WP_023908107.1 | succinate--CoA ligase subunit alpha | - |
| XFPR_RS12585 | - | 2399795..2400412 (+) | 618 | WP_230873152.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 470 a.a. Molecular weight: 51300.25 Da Isoelectric Point: 7.2157
>NTDB_id=132450 XFPR_RS10935 WP_031337107.1 2394007..2395419(-) (pilR) [Xylella fastidiosa strain Pr8x]
MNQSRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVNKIVRHYPRTPVA
MITAFGSMELAVEALKAGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESLPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATIEVPVDVRILSATHQDLSDLIADGRFRHDLYYRINVIEIRVPPLRERAGDLP
HLAAAIVARLAHTHGRAVPLLSPSALEALDHYSFPGNVRELENILERALALTEDDHIGVADLHLPQGSLHGQGLPLPLVP
TVLPIVPVDASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME
MNQSRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVNKIVRHYPRTPVA
MITAFGSMELAVEALKAGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESLPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATIEVPVDVRILSATHQDLSDLIADGRFRHDLYYRINVIEIRVPPLRERAGDLP
HLAAAIVARLAHTHGRAVPLLSPSALEALDHYSFPGNVRELENILERALALTEDDHIGVADLHLPQGSLHGQGLPLPLVP
TVLPIVPVDASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME
Nucleotide
Download Length: 1413 bp
>NTDB_id=132450 XFPR_RS10935 WP_031337107.1 2394007..2395419(-) (pilR) [Xylella fastidiosa strain Pr8x]
ATGAATCAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAACAAAATTGTGCGTCATTATCCACGTACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATGGAACTGGCGGTAGAGGCGCTCAAGGCAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAATGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGTCCCAGCCAACGTCTCCTTGGCGAGTCGTTACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCTCCGGTTTATATCCTTGGTGAATCCGGAGTTGGTAAGGAATTGGTTGCACGTACGATCCACGAACAGAGTGT
GCGTGCTGCTGGGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAACCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCATTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCGATGGCCGTT
TCCGTCACGACTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTGCGTGAGCGCGCCGGTGATTTGCCG
CATCTTGCTGCAGCCATTGTGGCTCGCTTGGCGCACACGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGATCATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGTCGCGGATCTGCATCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGTTCTCCCGATTGTGCCTGTGGACGCATCGGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTATAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCCTTGCGTTACAAACTAAAGAAGCTGGGCATGGAGTAA
ATGAATCAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAACAAAATTGTGCGTCATTATCCACGTACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATGGAACTGGCGGTAGAGGCGCTCAAGGCAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAATGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGTCCCAGCCAACGTCTCCTTGGCGAGTCGTTACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCTCCGGTTTATATCCTTGGTGAATCCGGAGTTGGTAAGGAATTGGTTGCACGTACGATCCACGAACAGAGTGT
GCGTGCTGCTGGGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAACCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCATTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCGATGGCCGTT
TCCGTCACGACTTGTACTACCGCATCAATGTGATCGAGATACGTGTTCCACCGCTGCGTGAGCGCGCCGGTGATTTGCCG
CATCTTGCTGCAGCCATTGTGGCTCGCTTGGCGCACACGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGATCATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGTCGCGGATCTGCATCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGTTCTCCCGATTGTGCCTGTGGACGCATCGGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCGTCGTATAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCCTTGCGTTACAAACTAAAGAAGCTGGGCATGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
58.635 |
99.787 |
0.585 |
| pilR | Acinetobacter baumannii strain A118 |
47.689 |
100 |
0.483 |