Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   OB04_RS16195 Genome accession   NZ_CP009796
Coordinates   3110070..3110714 (-) Length   214 a.a.
NCBI ID   WP_038429541.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3105070..3115714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS16160 (OB04_03173) mrpB 3106262..3106693 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  OB04_RS16165 (OB04_03174) mrpC 3106693..3107034 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  OB04_RS16170 (OB04_03175) mrpD 3107027..3108508 (+) 1482 WP_038429539.1 Na+/H+ antiporter subunit D -
  OB04_RS16175 (OB04_03176) mrpE 3108514..3108990 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  OB04_RS16180 (OB04_03177) mrpF 3108990..3109274 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  OB04_RS16185 (OB04_03178) mnhG 3109258..3109632 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  OB04_RS16190 (OB04_03179) yuxO 3109671..3110051 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  OB04_RS16195 (OB04_03180) comA 3110070..3110714 (-) 645 WP_038429541.1 two-component system response regulator ComA Regulator
  OB04_RS16200 (OB04_03181) comP 3110795..3113107 (-) 2313 WP_032722435.1 histidine kinase Regulator
  OB04_RS16205 (OB04_03182) comX 3113123..3113344 (-) 222 WP_014480704.1 competence pheromone ComX -
  OB04_RS16210 (OB04_03183) - 3113346..3114209 (-) 864 WP_032722437.1 polyprenyl synthetase family protein -
  OB04_RS16215 (OB04_03184) degQ 3114394..3114534 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  OB04_RS22335 - 3114756..3114881 (+) 126 WP_003228793.1 hypothetical protein -
  OB04_RS16220 (OB04_03185) - 3114995..3115363 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24140.56 Da        Isoelectric Point: 4.6857

>NTDB_id=132358 OB04_RS16195 WP_038429541.1 3110070..3110714(-) (comA) [Bacillus subtilis strain SG6]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYIGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=132358 OB04_RS16195 WP_038429541.1 3110070..3110714(-) (comA) [Bacillus subtilis strain SG6]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATATCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.533

100

0.995

Multiple sequence alignment