Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   OB04_RS06320 Genome accession   NZ_CP009796
Coordinates   1192290..1193411 (+) Length   373 a.a.
NCBI ID   WP_250540528.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1187290..1198411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS06295 (OB04_01237) yjbB 1187931..1189148 (+) 1218 WP_010886478.1 MFS transporter -
  OB04_RS06300 (OB04_01238) yjbC 1189313..1189891 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  OB04_RS06305 (OB04_01239) spx 1190072..1190467 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  OB04_RS06310 (OB04_01240) yjbE 1190510..1191166 (-) 657 WP_003232944.1 TerC family protein -
  OB04_RS22165 - 1191336..1191476 (+) 141 WP_119122854.1 hypothetical protein -
  OB04_RS06315 (OB04_01241) mecA 1191443..1192099 (+) 657 WP_003232942.1 adaptor protein MecA Regulator
  OB04_RS22170 - 1192094..1192216 (-) 123 WP_021479547.1 hypothetical protein -
  OB04_RS06320 (OB04_01242) coiA 1192290..1193411 (+) 1122 WP_250540528.1 competence protein CoiA Machinery gene
  OB04_RS06325 (OB04_01243) pepF 1193641..1195470 (+) 1830 WP_195757679.1 oligoendopeptidase F -
  OB04_RS21435 (OB04_01244) - 1195508..1195675 (-) 168 WP_003244944.1 hypothetical protein -
  OB04_RS06340 (OB04_01246) spxH 1195989..1196888 (-) 900 WP_024573348.1 protease adaptor protein SpxH -
  OB04_RS06345 (OB04_01247) bhbI 1196885..1197283 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  OB04_RS06350 (OB04_01248) cwlQ 1197538..1198272 (-) 735 WP_038428790.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 43832.82 Da        Isoelectric Point: 10.0451

>NTDB_id=132322 OB04_RS06320 WP_250540528.1 1192290..1193411(+) (coiA) [Bacillus subtilis strain SG6]
MFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLKTQRASPILEP
YIKTINQRPDVMARIKEHMVAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAFHWQFINASPY
RELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGADDLFFTEPKPSIQYSGWTKAIHRFRHKPHRFNSKETNRL
RQMFYEKRQTSFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGDKRAPIRFSAVLQQCKLHIHKKNIALRFECSE
ECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFVE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=132322 OB04_RS06320 WP_250540528.1 1192290..1193411(+) (coiA) [Bacillus subtilis strain SG6]
ATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACGGTTCTTCTGTCCGGTATGCGGGGGAGAGCT
AGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGAACAAGTCCTGCTCCATAGATATCGAACCGG
AAAGCGCCTACCACTTAGAAGGAAAAAGACAGTTGTATGTATGGCTGAAAACGCAACGGGCTTCACCAATATTGGAGCCG
TATATAAAGACAATCAACCAAAGACCAGACGTCATGGCAAGGATCAAGGAGCATATGGTTGCTGTTGAATATCAATGCGC
CACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAGAAGGAATCATCCCGCAGTGGATTATGGGAT
ACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTTCATTGGCAGTTTATCAATGCAAGTCCATAC
AGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGACTCAGCCACATCATTCCATTCTACACAAACCATTC
TTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGACGATCTTTTTTTCACTGAACCGAAACCCTCAATTC
AATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCATCGGTTTAACTCTAAGGAAACAAATCGCCTT
AGGCAGATGTTTTATGAGAAGCGGCAGACATCTTTTTCTTTTCTGCCGACTGAAGTGTTTGTTCCTGTTAGAAAAGGGGC
AGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTATGACGGATCTTGGAGATAAACGTGCGCCAA
TTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAAAAAGAACATTGCACTCAGGTTCGAATGCAGCGAA
GAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAAGGGATTTTTAAGGGAGACTCAGAAAGAAGT
ATATGTGCTGAATCAGCCTGCAGGCGGCATACATTCCATGCAGGATCTCATAGAAAGAGACCGCAGCTGTTTTGTAGAAT
GA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

96.783

100

0.968


Multiple sequence alignment