Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   FORC6_RS10715 Genome accession   NZ_CP009765
Coordinates   2249097..2250500 (-) Length   467 a.a.
NCBI ID   WP_060658087.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_006     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2244097..2255500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC6_RS10680 (FORC6_2040) moaE 2244670..2245125 (-) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -
  FORC6_RS10685 (FORC6_2041) moaD 2245127..2245384 (-) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  FORC6_RS10690 (FORC6_2042) moaC 2245381..2245860 (-) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  FORC6_RS10695 (FORC6_2043) moaB 2245887..2246399 (-) 513 WP_060658083.1 molybdenum cofactor biosynthesis protein B -
  FORC6_RS10700 (FORC6_2044) moaA 2246501..2247490 (-) 990 WP_015297056.1 GTP 3',8-cyclase MoaA -
  FORC6_RS10705 (FORC6_2045) - 2247786..2248679 (+) 894 WP_060658085.1 YvcK family protein -
  FORC6_RS10710 (FORC6_2046) luxU 2248756..2249094 (-) 339 WP_021449858.1 quorum-sensing phosphorelay protein LuxU -
  FORC6_RS10715 (FORC6_2047) luxO 2249097..2250500 (-) 1404 WP_060658087.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  FORC6_RS10720 (FORC6_2048) uvrB 2250789..2252819 (-) 2031 WP_060658089.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52201.77 Da        Isoelectric Point: 6.2547

>NTDB_id=132007 FORC6_RS10715 WP_060658087.1 2249097..2250500(-) (luxO) [Vibrio parahaemolyticus strain FORC_006]
MQQKTEGQKSRYLLMVEDTVSVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=132007 FORC6_RS10715 WP_060658087.1 2249097..2250500(-) (luxO) [Vibrio parahaemolyticus strain FORC_006]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGTATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTCCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTACCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAGGCGATGCGTCATGGATCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGCAATCAGAATTACCAAGGTTTCATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCGGCCATACCTAAAGACTTAATCGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAGAAAGTGGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGACCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTACTACGCAATA
TCGTGGTGCTCAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTGAATCAACCGTTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGGCGTGTGACGGCAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.277

95.931

0.837
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368

Multiple sequence alignment