Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AEI26_RS05465 Genome accession   NZ_CP012212
Coordinates   1034498..1035049 (+) Length   183 a.a.
NCBI ID   WP_002861797.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ017CCUA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1029498..1040049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI26_RS05440 (AEI26_05390) rseP 1029670..1030776 (+) 1107 WP_070252703.1 RIP metalloprotease RseP -
  AEI26_RS05445 (AEI26_05395) - 1030769..1031629 (+) 861 WP_002870550.1 VirK family antimicrobial peptide resistance protein -
  AEI26_RS05450 (AEI26_05400) - 1031622..1032623 (-) 1002 WP_115801381.1 sugar phosphate isomerase/epimerase family protein -
  AEI26_RS05455 (AEI26_05405) - 1032620..1033894 (-) 1275 WP_115801382.1 MFS transporter -
  AEI26_RS05460 (AEI26_05410) rpsF 1034112..1034489 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  AEI26_RS05465 (AEI26_05415) ssb 1034498..1035049 (+) 552 WP_002861797.1 single-stranded DNA-binding protein Machinery gene
  AEI26_RS05470 (AEI26_05420) rpsR 1035060..1035320 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AEI26_RS05475 (AEI26_05425) lon 1035381..1037756 (-) 2376 WP_070298839.1 endopeptidase La -
  AEI26_RS05480 (AEI26_05430) - 1037773..1038420 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  AEI26_RS05485 (AEI26_05435) fliW 1038581..1038970 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AEI26_RS05490 (AEI26_05440) proC 1038970..1039701 (+) 732 WP_052857600.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI26_RS05495 (AEI26_05445) ctsT 1039698..1040000 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20649.56 Da        Isoelectric Point: 5.0431

>NTDB_id=131899 AEI26_RS05465 WP_002861797.1 1034498..1035049(+) (ssb) [Campylobacter jejuni strain CJ017CCUA]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGGNSNAPQQGGIGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=131899 AEI26_RS05465 WP_002861797.1 1034498..1035049(+) (ssb) [Campylobacter jejuni strain CJ017CCUA]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
GGCTTCTGCTATCGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAGGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAGCATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCGGCAA
TTCCAATGCTCCACAACAAGGTGGAATTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.158

100

0.372
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361