Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NZ30_RS06035 Genome accession   NZ_CP009750
Coordinates   1359433..1360821 (-) Length   462 a.a.
NCBI ID   WP_003466378.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. undulosa strain ICMP11055     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1359062..1369024 1359433..1360821 within 0


Gene organization within MGE regions


Location: 1359062..1369024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NZ30_RS06030 (NZ30_05875) - 1359062..1359244 (-) 183 WP_003466380.1 YhfG family protein -
  NZ30_RS06035 (NZ30_05880) pilR 1359433..1360821 (-) 1389 WP_003466378.1 sigma-54 dependent transcriptional regulator Regulator
  NZ30_RS06040 (NZ30_05885) - 1360896..1362509 (-) 1614 WP_108084728.1 ATP-binding protein -
  NZ30_RS06045 (NZ30_05890) sucC 1362750..1363913 (+) 1164 WP_003466374.1 ADP-forming succinate--CoA ligase subunit beta -
  NZ30_RS06050 (NZ30_05895) sucD 1363937..1364809 (+) 873 WP_003466372.1 succinate--CoA ligase subunit alpha -
  NZ30_RS21540 (NZ30_05900) - 1365095..1366393 (+) 1299 WP_233243572.1 hypothetical protein -
  NZ30_RS21545 - 1366342..1366647 (+) 306 WP_003466368.1 PQQ-binding-like beta-propeller repeat protein -
  NZ30_RS20475 - 1366760..1369024 (-) 2265 WP_146169960.1 hypothetical protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49892.38 Da        Isoelectric Point: 6.7311

>NTDB_id=131845 NZ30_RS06035 WP_003466378.1 1359433..1360821(-) (pilR) [Xanthomonas translucens pv. undulosa strain ICMP11055]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNRERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSARPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYPFPGNVRELENILERALAMAEEDQISAADLHLPQPGNSARVAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=131845 NZ30_RS06035 WP_003466378.1 1359433..1360821(-) (pilR) [Xanthomonas translucens pv. undulosa strain ICMP11055]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTCCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACCGCGAACGCGCCGCGCCGCCAGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCAATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTCGGCAAGGAGTTGGTCGCGCGCACCATCCATGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTAATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGACTGTTCCAGGCCGCGCACGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGCGCGCCCGGTGGGCGC
CTCGATCGAGGTGCCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAATGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACCCCTTCCCTGGCAACGTGCGCGAACTGGAGAACATCCTTGAGCGCGCCCTGGCAATGGCCGAAG
AGGACCAGATCAGCGCCGCCGATCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGTCGCGGCCGAAGCCGCGCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAACTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.309

99.351

0.619
  pilR Acinetobacter baumannii strain A118

47.198

100

0.474

Multiple sequence alignment