Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AEI10_RS05295 Genome accession   NZ_CP012210
Coordinates   989367..989918 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ515CC45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 984367..994918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI10_RS05260 (AEI10_05220) - 984557..984982 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  AEI10_RS05265 (AEI10_05225) - 985047..985666 (+) 620 Protein_1012 nitroreductase family protein -
  AEI10_RS05270 (AEI10_05230) - 985666..986271 (+) 606 WP_022552319.1 NAD(P)H-dependent oxidoreductase -
  AEI10_RS05275 (AEI10_05235) pgsA 986396..986932 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AEI10_RS05280 (AEI10_05240) rseP 986929..988035 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  AEI10_RS05285 (AEI10_05245) - 988028..988894 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  AEI10_RS05290 (AEI10_05250) rpsF 988981..989358 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  AEI10_RS05295 (AEI10_05255) ssb 989367..989918 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  AEI10_RS05300 (AEI10_05260) rpsR 989929..990189 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AEI10_RS05305 (AEI10_05265) lon 990249..992624 (-) 2376 WP_002853487.1 endopeptidase La -
  AEI10_RS05310 (AEI10_05270) - 992641..993288 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  AEI10_RS05315 (AEI10_05275) fliW 993449..993838 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AEI10_RS05320 (AEI10_05280) proC 993838..994569 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI10_RS05325 (AEI10_05285) ctsT 994566..994868 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=131807 AEI10_RS05295 WP_002853013.1 989367..989918(+) (ssb) [Campylobacter jejuni strain CJ515CC45]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=131807 AEI10_RS05295 WP_002853013.1 989367..989918(+) (ssb) [Campylobacter jejuni strain CJ515CC45]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment