Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   BF29_RS07360 Genome accession   NZ_CP009709
Coordinates   1423599..1424393 (-) Length   264 a.a.
NCBI ID   WP_029141644.1    Uniprot ID   -
Organism   Heyndrickxia coagulans DSM     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1418599..1429393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF29_RS07330 (BF29_1478) - 1418618..1420075 (+) 1458 WP_029141640.1 glutamate synthase subunit beta -
  BF29_RS07340 (BF29_1480) mutY 1420694..1421785 (-) 1092 WP_019721542.1 A/G-specific adenine glycosylase -
  BF29_RS07345 (BF29_1481) - 1421965..1422945 (+) 981 WP_029141641.1 metal-dependent hydrolase -
  BF29_RS07350 (BF29_1482) - 1423030..1423188 (+) 159 WP_029141642.1 small, acid-soluble spore protein K -
  BF29_RS07355 (BF29_1483) - 1423279..1423596 (-) 318 WP_029141643.1 YfhH family protein -
  BF29_RS07360 (BF29_1484) recX 1423599..1424393 (-) 795 WP_029141644.1 recombination regulator RecX Regulator
  BF29_RS17330 (BF29_1485) - 1424481..1424603 (+) 123 WP_073193833.1 YfhE family protein -
  BF29_RS07365 (BF29_1486) - 1424684..1424866 (+) 183 WP_017552868.1 YfhD family protein -
  BF29_RS07370 (BF29_1487) trpA 1425114..1425905 (-) 792 WP_029141645.1 tryptophan synthase subunit alpha -
  BF29_RS17810 (BF29_1488) - 1425898..1426041 (-) 144 WP_019721536.1 hypothetical protein -
  BF29_RS07375 (BF29_1489) trpB 1426034..1427239 (-) 1206 WP_029141646.1 tryptophan synthase subunit beta -
  BF29_RS07380 (BF29_1490) trpCF 1427217..1428641 (-) 1425 WP_029141647.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30864.60 Da        Isoelectric Point: 9.3837

>NTDB_id=131486 BF29_RS07360 WP_029141644.1 1423599..1424393(-) (recX) [Heyndrickxia coagulans DSM]
MPVITKISLQKNNKERYNIFLDGKYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIRFLSYRMRSEKEV
RDDLIKKEFAPEVVRSVISKLYEMQYLDDAEFAASFVRTQMNTTHKGPVVINRELQQKGIAPEMIEKALEIFDADQQVEH
ARALAEKLSRQHARLSEKLLKQKVKQGLTVKGYPPEVISAAMAALHVEKDEETEWKALLQHAEKAKRKYGKFSGYVYRQK
MKQFLYRKGFPMDLIERYLREEGD

Nucleotide


Download         Length: 795 bp        

>NTDB_id=131486 BF29_RS07360 WP_029141644.1 1423599..1424393(-) (recX) [Heyndrickxia coagulans DSM]
GTGCCTGTCATTACAAAAATTTCGCTTCAAAAAAACAATAAAGAACGATACAATATTTTTCTTGACGGAAAGTACCGGTT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTTTAAAAGGGAAAGAATTGGATGAGCTTGATATTGAAGCGATCC
TTGCCGAGGATGATATCCGGAAAGGCGTCAATACCGCCATCCGTTTTCTTTCCTACCGGATGCGGTCGGAAAAAGAAGTG
CGTGATGATTTGATAAAAAAGGAATTTGCGCCGGAAGTCGTCCGGAGTGTCATATCAAAGCTTTATGAAATGCAGTATCT
TGATGATGCGGAATTTGCCGCAAGTTTCGTGCGGACACAAATGAATACAACGCATAAAGGGCCTGTTGTCATTAACAGGG
AACTTCAGCAAAAAGGCATTGCACCAGAGATGATCGAAAAAGCGCTTGAAATTTTTGATGCTGATCAGCAAGTGGAACAT
GCCCGTGCCCTTGCAGAAAAACTTTCCAGGCAGCATGCCCGGTTGTCGGAGAAGCTTTTAAAGCAAAAAGTGAAGCAGGG
GCTTACAGTAAAAGGCTATCCGCCTGAAGTGATTTCCGCTGCGATGGCGGCGCTTCATGTTGAAAAGGATGAAGAAACGG
AATGGAAAGCACTTCTTCAGCATGCCGAAAAAGCAAAGCGCAAATACGGAAAGTTTTCGGGATATGTATACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGATGGATTTGATAGAGCGCTATTTGCGGGAAGAGGGGGATTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.672

99.242

0.523

Multiple sequence alignment