Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ADJ80_RS03685 Genome accession   NZ_CP012067
Coordinates   748049..748852 (-) Length   267 a.a.
NCBI ID   WP_050692986.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus strain W10433     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 743049..753852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADJ80_RS03655 (ADJ80_03670) aroB 743306..744394 (-) 1089 WP_050692983.1 3-dehydroquinate synthase -
  ADJ80_RS03660 (ADJ80_03675) aroK 744416..744943 (-) 528 WP_050692984.1 shikimate kinase AroK -
  ADJ80_RS03665 (ADJ80_03680) comE 745158..746582 (-) 1425 WP_050692985.1 type IV pilus secretin PilQ Machinery gene
  ADJ80_RS03670 (ADJ80_03685) - 746592..746987 (-) 396 WP_005701815.1 hypothetical protein -
  ADJ80_RS03675 (ADJ80_03690) - 746987..747520 (-) 534 WP_005701814.1 competence protein -
  ADJ80_RS03680 (ADJ80_03695) - 747517..748035 (-) 519 WP_005701813.1 PilN domain-containing protein -
  ADJ80_RS03685 (ADJ80_03700) comA 748049..748852 (-) 804 WP_050692986.1 hypothetical protein Machinery gene
  ADJ80_RS03690 (ADJ80_03705) - 748979..751540 (+) 2562 WP_050692987.1 penicillin-binding protein 1A -
  ADJ80_RS03695 (ADJ80_03710) - 751648..752493 (+) 846 WP_050692988.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31266.74 Da        Isoelectric Point: 6.4938

>NTDB_id=131195 ADJ80_RS03685 WP_050692986.1 748049..748852(-) (comA) [Aggregatibacter aphrophilus strain W10433]
MFIKHTPSIQIGLWYHNQNVDLVWFDKQNQAQCLHLDDIDLLDLPGALNRHSNYLRRSASYKYITSIMPHQIWQKTLILP
HNLTPAECEQQCHFTLTNELPIPINEIWYDYAATPLKQGFRLEIFAIRQQIAKDYLHQFAPLQIDVLDNTAKAILRATEY
VLGKPFPANAVLLYQDALGALAVQHKLQQTQTLFQTDKNLTALLAQYCQRYDEQPEQIFYYQMVRNDSVVPKHWRPVETH
LPLIALGNALWQQEIHKEDDELFRSFS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=131195 ADJ80_RS03685 WP_050692986.1 748049..748852(-) (comA) [Aggregatibacter aphrophilus strain W10433]
ATGTTCATAAAACATACACCTTCTATTCAAATCGGCTTGTGGTATCACAACCAAAATGTGGATCTCGTGTGGTTCGACAA
GCAAAACCAAGCACAATGTTTACATCTCGACGACATAGATCTGCTGGATTTACCCGGCGCCTTAAATCGTCACTCAAATT
ATTTACGCAGAAGTGCATCGTATAAATACATAACATCTATCATGCCACACCAAATTTGGCAGAAAACGTTAATTCTGCCG
CATAATCTCACGCCGGCGGAATGTGAACAACAATGTCATTTCACCTTAACCAACGAGCTACCGATTCCCATTAATGAAAT
TTGGTATGACTACGCTGCCACGCCGTTAAAACAAGGTTTTCGGCTAGAGATTTTTGCCATTAGACAACAAATCGCGAAAG
ATTATTTACATCAATTTGCGCCTTTACAAATTGACGTGTTGGACAACACCGCCAAGGCGATATTGCGTGCAACGGAATAT
GTACTGGGCAAACCGTTCCCGGCAAACGCCGTGTTGTTATATCAGGACGCACTAGGTGCATTGGCGGTACAACATAAATT
GCAGCAAACCCAAACTTTATTCCAAACGGACAAAAATTTGACCGCACTTTTAGCACAATATTGCCAACGTTATGACGAAC
AGCCGGAACAGATTTTCTATTATCAAATGGTCCGAAATGATTCTGTGGTCCCAAAACATTGGCGCCCGGTGGAAACCCAT
TTGCCGTTAATTGCGCTCGGCAATGCCTTATGGCAACAAGAAATACATAAAGAAGATGATGAACTTTTTCGTTCGTTTTC
TTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

40.53

98.876

0.401
  comA Haemophilus influenzae Rd KW20

40.31

96.629

0.39

Multiple sequence alignment