Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ADJ80_RS00035 Genome accession   NZ_CP012067
Coordinates   6158..6850 (+) Length   230 a.a.
NCBI ID   WP_050692440.1    Uniprot ID   A0ABX9VVV0
Organism   Aggregatibacter aphrophilus strain W10433     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1158..11850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADJ80_RS00010 (ADJ80_00010) nanQ 1425..1895 (+) 471 WP_050692437.1 N-acetylneuraminate anomerase -
  ADJ80_RS00015 (ADJ80_00015) ampD 2368..2922 (-) 555 WP_050694142.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ADJ80_RS00020 (ADJ80_00020) pilA 3047..3496 (+) 450 WP_050692438.1 pilin Machinery gene
  ADJ80_RS00025 (ADJ80_00025) pilB 3521..4930 (+) 1410 WP_005704570.1 GspE/PulE family protein Machinery gene
  ADJ80_RS00030 (ADJ80_00030) pilC 4923..6161 (+) 1239 WP_050692439.1 type II secretion system F family protein Machinery gene
  ADJ80_RS00035 (ADJ80_00035) pilD 6158..6850 (+) 693 WP_050692440.1 prepilin peptidase Machinery gene
  ADJ80_RS00040 (ADJ80_00040) coaE 6903..7523 (+) 621 WP_050692441.1 dephospho-CoA kinase -
  ADJ80_RS00045 (ADJ80_00045) yacG 7516..7728 (+) 213 WP_005701268.1 DNA gyrase inhibitor YacG -
  ADJ80_RS00050 (ADJ80_00050) - 7728..7994 (+) 267 WP_005704566.1 GNAT family N-acetyltransferase -
  ADJ80_RS00055 (ADJ80_00055) - 8362..9735 (+) 1374 WP_050692442.1 alanine/glycine:cation symporter family protein -
  ADJ80_RS00060 (ADJ80_00060) raiA 9962..10285 (+) 324 WP_050692443.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26080.84 Da        Isoelectric Point: 8.1963

>NTDB_id=131174 ADJ80_RS00035 WP_050692440.1 6158..6850(+) (pilD) [Aggregatibacter aphrophilus strain W10433]
MIGIAFVFAGWLIGRVIYGYVHRFAFRLSQEIHAAYVEIYPENPPHFAPEKSILTPMKTKISQPYYCLFFALLFALCYWL
NENILTAICWACFCSLLFAISVVDGYYRLISPALCQNLFALGLGAAYWQITPPTLEQSLQSAVIFFAVFSLIYYGAKWYY
KQEAFGRGDCWLALGLGAFFSYEQLPAFLLLACLSGLVYALYGKLNKRYLTTIPFGPFLSLSGVLCRLLN

Nucleotide


Download         Length: 693 bp        

>NTDB_id=131174 ADJ80_RS00035 WP_050692440.1 6158..6850(+) (pilD) [Aggregatibacter aphrophilus strain W10433]
ATGATAGGCATAGCATTTGTATTCGCAGGCTGGCTTATAGGGCGCGTGATTTATGGCTATGTGCATCGCTTCGCCTTCCG
TTTAAGCCAAGAAATTCATGCCGCCTATGTTGAAATTTACCCAGAAAACCCACCGCACTTTGCGCCGGAGAAATCCATAT
TGACGCCCATGAAAACCAAGATTTCCCAACCTTATTACTGCCTCTTTTTCGCCTTGTTATTTGCGCTTTGTTATTGGCTA
AATGAGAACATTCTAACGGCGATATGTTGGGCGTGTTTTTGTAGTTTATTATTCGCCATCTCGGTGGTGGATGGGTATTA
CCGCTTAATTTCGCCCGCCCTATGCCAAAACCTGTTTGCCCTCGGATTGGGCGCAGCCTATTGGCAAATTACGCCCCCCA
CACTGGAACAAAGCCTACAAAGTGCGGTCATTTTTTTCGCCGTTTTTTCTCTTATCTACTACGGCGCCAAATGGTATTAC
AAACAAGAAGCCTTCGGGCGTGGCGATTGCTGGCTCGCCTTGGGACTAGGCGCGTTTTTCTCTTATGAGCAATTACCCGC
CTTTTTATTACTTGCCTGCCTTTCGGGCTTGGTTTATGCGCTTTACGGCAAGCTAAACAAACGCTACTTAACGACCATTC
CTTTCGGCCCGTTTCTTTCTTTGTCCGGCGTACTGTGTCGGTTGCTTAATTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(93-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

37.5

100

0.378
  pilD Haemophilus influenzae Rd KW20

37.885

98.696

0.374

Multiple sequence alignment