Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | EP23_RS15645 | Genome accession | NZ_CP009623 |
| Coordinates | 731291..732265 (-) | Length | 324 a.a. |
| NCBI ID | WP_060551125.1 | Uniprot ID | - |
| Organism | Staphylococcus agnetis strain 908 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 726291..737265
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EP23_RS15610 (EP23_03525) | gcvT | 726922..728013 (-) | 1092 | WP_060551123.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EP23_RS15615 (EP23_03530) | - | 728165..728734 (-) | 570 | WP_060552479.1 | shikimate kinase | - |
| EP23_RS15620 (EP23_12440) | - | 728673..728885 (-) | 213 | WP_171509143.1 | hypothetical protein | - |
| EP23_RS15625 (EP23_03535) | - | 728854..729336 (-) | 483 | WP_060551124.1 | competence type IV pilus minor pilin ComGF | - |
| EP23_RS15630 (EP23_03540) | comGD | 729528..729959 (-) | 432 | WP_225906114.1 | competence type IV pilus minor pilin ComGD | - |
| EP23_RS15635 (EP23_03545) | comGC | 729949..730260 (-) | 312 | WP_060552480.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EP23_RS24570 | - | 730281..730937 (-) | 657 | WP_253724562.1 | type II secretion system F family protein | - |
| EP23_RS15645 (EP23_03555) | comGA | 731291..732265 (-) | 975 | WP_060551125.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EP23_RS15650 (EP23_03560) | - | 732322..732945 (-) | 624 | WP_060551126.1 | MBL fold metallo-hydrolase | - |
| EP23_RS15655 (EP23_03565) | - | 732960..733271 (-) | 312 | WP_060551127.1 | MTH1187 family thiamine-binding protein | - |
| EP23_RS15660 (EP23_03570) | - | 733272..734258 (-) | 987 | WP_060551128.1 | ROK family glucokinase | - |
| EP23_RS15665 (EP23_03575) | - | 734255..734458 (-) | 204 | WP_037567684.1 | YqgQ family protein | - |
| EP23_RS15670 (EP23_03580) | - | 734460..735899 (-) | 1440 | WP_060551129.1 | rhomboid family intramembrane serine protease | - |
| EP23_RS15675 (EP23_03585) | - | 735917..736456 (-) | 540 | WP_060551130.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| EP23_RS15680 (EP23_03590) | rpmG | 736569..736718 (-) | 150 | WP_037567677.1 | 50S ribosomal protein L33 | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36974.82 Da Isoelectric Point: 7.8369
>NTDB_id=130825 EP23_RS15645 WP_060551125.1 731291..732265(-) (comGA) [Staphylococcus agnetis strain 908]
MQLLIDHVVQYAIKHEASDIHFIPNSSQVEVKLRVKDHLQCFDTLNLETYQKLLTLLKFKAGLDVSSRHKAQSGRYIYEF
ETLYYLRVSTLPLNLGSESCVIRITPQLFQADFNQTAHDIQRIMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLLNGVTQISVNEKADITYGNSLKAILRCDPDVILIGEIRDGLIAKEVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGITKQDLIQALNLIVNQRLITTNNHSRRLVYELMSQEDIQYFLNHNFLLPKNFKSLNDKLNDLQKKGEIDAHTLR
KYQK
MQLLIDHVVQYAIKHEASDIHFIPNSSQVEVKLRVKDHLQCFDTLNLETYQKLLTLLKFKAGLDVSSRHKAQSGRYIYEF
ETLYYLRVSTLPLNLGSESCVIRITPQLFQADFNQTAHDIQRIMEKKQGLILFSGPTGAGKSTLMYQMVVYAKEKLNLNI
ITIEDPVEQLLNGVTQISVNEKADITYGNSLKAILRCDPDVILIGEIRDGLIAKEVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGITKQDLIQALNLIVNQRLITTNNHSRRLVYELMSQEDIQYFLNHNFLLPKNFKSLNDKLNDLQKKGEIDAHTLR
KYQK
Nucleotide
Download Length: 975 bp
>NTDB_id=130825 EP23_RS15645 WP_060551125.1 731291..732265(-) (comGA) [Staphylococcus agnetis strain 908]
ATGCAACTATTAATTGATCATGTTGTTCAATATGCTATTAAACATGAGGCGTCTGATATCCATTTTATCCCTAATTCATC
ACAAGTAGAGGTCAAGCTAAGAGTTAAAGATCATTTGCAATGTTTTGACACATTAAATTTAGAAACGTATCAAAAATTGT
TAACATTATTAAAATTCAAAGCAGGCCTTGATGTTTCCTCAAGACATAAAGCACAAAGCGGTCGTTACATTTACGAATTT
GAGACTTTATACTATTTACGTGTATCAACTCTACCTCTAAATTTAGGTTCTGAAAGTTGCGTGATTCGTATCACACCTCA
ACTTTTTCAAGCAGATTTCAACCAAACTGCACATGATATACAAAGAATTATGGAAAAGAAACAAGGTTTAATTTTATTTA
GTGGTCCTACTGGTGCTGGCAAGAGTACATTAATGTACCAAATGGTGGTTTATGCAAAAGAAAAACTCAATTTAAATATC
ATTACTATCGAAGATCCTGTCGAACAATTGCTAAATGGTGTAACTCAGATTTCAGTAAATGAAAAAGCTGATATCACATA
TGGCAACTCATTAAAGGCTATTTTACGTTGCGATCCCGACGTTATCTTGATTGGTGAAATTAGAGATGGATTAATTGCTA
AGGAAGTGATTCAAGCAAGTTTAAGCGGACACTTAGTTTTATCGACCATTCATGCAAATGATTGTCAAGGTGTGTTGTTA
CGACTAATCGAAATGGGGATAACTAAACAAGATTTAATTCAGGCACTCAACTTAATTGTAAATCAAAGGTTAATTACAAC
TAATAATCATTCAAGACGCTTAGTCTACGAGTTAATGTCTCAAGAAGATATTCAATACTTTTTAAACCATAATTTTTTAC
TTCCTAAAAACTTTAAAAGTCTAAATGACAAACTTAATGATTTACAAAAGAAAGGAGAGATAGATGCGCACACACTTAGA
AAATATCAAAAATAG
ATGCAACTATTAATTGATCATGTTGTTCAATATGCTATTAAACATGAGGCGTCTGATATCCATTTTATCCCTAATTCATC
ACAAGTAGAGGTCAAGCTAAGAGTTAAAGATCATTTGCAATGTTTTGACACATTAAATTTAGAAACGTATCAAAAATTGT
TAACATTATTAAAATTCAAAGCAGGCCTTGATGTTTCCTCAAGACATAAAGCACAAAGCGGTCGTTACATTTACGAATTT
GAGACTTTATACTATTTACGTGTATCAACTCTACCTCTAAATTTAGGTTCTGAAAGTTGCGTGATTCGTATCACACCTCA
ACTTTTTCAAGCAGATTTCAACCAAACTGCACATGATATACAAAGAATTATGGAAAAGAAACAAGGTTTAATTTTATTTA
GTGGTCCTACTGGTGCTGGCAAGAGTACATTAATGTACCAAATGGTGGTTTATGCAAAAGAAAAACTCAATTTAAATATC
ATTACTATCGAAGATCCTGTCGAACAATTGCTAAATGGTGTAACTCAGATTTCAGTAAATGAAAAAGCTGATATCACATA
TGGCAACTCATTAAAGGCTATTTTACGTTGCGATCCCGACGTTATCTTGATTGGTGAAATTAGAGATGGATTAATTGCTA
AGGAAGTGATTCAAGCAAGTTTAAGCGGACACTTAGTTTTATCGACCATTCATGCAAATGATTGTCAAGGTGTGTTGTTA
CGACTAATCGAAATGGGGATAACTAAACAAGATTTAATTCAGGCACTCAACTTAATTGTAAATCAAAGGTTAATTACAAC
TAATAATCATTCAAGACGCTTAGTCTACGAGTTAATGTCTCAAGAAGATATTCAATACTTTTTAAACCATAATTTTTTAC
TTCCTAAAAACTTTAAAAGTCTAAATGACAAACTTAATGATTTACAAAAGAAAGGAGAGATAGATGCGCACACACTTAGA
AAATATCAAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
58.824 |
99.691 |
0.586 |
| comGA | Staphylococcus aureus N315 |
58.824 |
99.691 |
0.586 |