Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   VT05_RS10005 Genome accession   NZ_CP012026
Coordinates   1850692..1851099 (-) Length   135 a.a.
NCBI ID   WP_017146987.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1845692..1856099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT05_RS09980 (VT05_01898) msrAB 1846043..1847611 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  VT05_RS09985 (VT05_01899) pilA 1847757..1849010 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  VT05_RS15935 - 1849364..1849877 (-) 514 Protein_1872 pilin -
  VT05_RS10000 pilE 1850246..1850389 (-) 144 WP_017146986.1 hypothetical protein Machinery gene
  VT05_RS14500 - 1850494..1850574 (-) 81 Protein_1874 pilin -
  VT05_RS10005 (VT05_01902) pilE 1850692..1851099 (-) 408 WP_017146987.1 pilin Machinery gene
  VT05_RS10010 (VT05_01903) lpxC 1851205..1852128 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  VT05_RS10015 (VT05_01904) - 1852620..1853021 (-) 402 Protein_1877 pilin -
  VT05_RS10020 (VT05_01905) - 1853555..1853950 (-) 396 Protein_1878 pilin -
  VT05_RS10025 (VT05_01906) - 1854399..1854764 (-) 366 Protein_1879 pilin -
  VT05_RS10030 (VT05_01907) - 1854775..1855155 (-) 381 Protein_1880 pilin -
  VT05_RS10035 (VT05_01908) - 1855330..1855680 (-) 351 Protein_1881 pilin -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14575.32 Da        Isoelectric Point: 9.0330

>NTDB_id=130814 VT05_RS10005 WP_017146987.1 1850692..1851099(-) (pilE) [Neisseria gonorrhoeae strain FA19]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPENNDSAGVASASKIIGKYVKEVKVENGVVTAEMASSGVNKEIQ
GKKLSLWAKRQDGSVKWFCGQPVTRTAGAKTGADTNGKIDTKHLPSTCRDKHSDT

Nucleotide


Download         Length: 408 bp        

>NTDB_id=130814 VT05_RS10005 WP_017146987.1 1850692..1851099(-) (pilE) [Neisseria gonorrhoeae strain FA19]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAAACAACGACTCTGCCGGCGTGGCATCCGCTTCAAAAATCATAGGCA
AATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCGAAATGGCTTCAAGCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCACCGC
CGGCGCCAAAACCGGCGCCGACACCAACGGCAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGTGATAAACACTCTG
ACACCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(14-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

72.993

100

0.741
  pilE Neisseria gonorrhoeae MS11

70.803

100

0.719