Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   IX92_RS19880 Genome accession   NZ_CP009618
Coordinates   855801..856898 (+) Length   365 a.a.
NCBI ID   WP_043010253.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE98     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 850801..861898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX92_RS19850 (IX92_19850) - 852186..852437 (-) 252 WP_029236068.1 YgjV family protein -
  IX92_RS19855 (IX92_19855) - 852732..853052 (-) 321 WP_006961083.1 DUF496 family protein -
  IX92_RS19860 (IX92_19860) - 853246..853440 (+) 195 WP_006961082.1 hypothetical protein -
  IX92_RS19865 (IX92_19865) - 853470..854129 (+) 660 WP_006961081.1 YceH family protein -
  IX92_RS19870 (IX92_19870) - 854129..854446 (+) 318 WP_019275432.1 GIY-YIG nuclease family protein -
  IX92_RS19875 (IX92_19875) traF 854513..855652 (+) 1140 WP_039952225.1 conjugal transfer protein TraF -
  IX92_RS19880 (IX92_19880) luxP 855801..856898 (+) 1098 WP_043010253.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  IX92_RS19885 (IX92_19885) luxQ 856898..859468 (+) 2571 WP_043010254.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  IX92_RS19890 (IX92_19890) - 859454..860119 (-) 666 WP_040121665.1 PilZ domain-containing protein -
  IX92_RS19895 (IX92_19895) glpD 860226..861758 (-) 1533 WP_038161412.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41277.49 Da        Isoelectric Point: 5.6651

>NTDB_id=130796 IX92_RS19880 WP_043010253.1 855801..856898(+) (luxP) [Vibrio coralliilyticus strain RE98]
MFKATLLSLAVAVSATSQAHTTQVLNGYWQYDEYLDSHPVQKQLTDTLSETVRNYPTPISAKQDKPVSIAVVYPGQQISD
YWVRNIKAFETRLEKLGISYKINQVFTRPNLDVRQQSLSLLEAVQNKADYLIFTLDTTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWDDQQPFMYVGFDHIKGARILEQYYKDTIPKESRYSVLYFSEGYVSDARGDTFIEEMSHHDSYKLSSSYYTTAT
RESGFNAAVKAIEKDPSISFIYACSTDVALGAVEALKSMKREDILINGWGGGSAELEAISKGDLDVTAMRMNDDTGIAMA
EAIKWDLEGKDVPHVYSGDFEIVTKADSPSKVEKLKQRAFRYSDQ

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=130796 IX92_RS19880 WP_043010253.1 855801..856898(+) (luxP) [Vibrio coralliilyticus strain RE98]
ATGTTTAAAGCAACGCTATTATCATTGGCGGTCGCTGTATCAGCGACAAGTCAGGCACACACTACACAAGTCCTCAATGG
TTACTGGCAATACGACGAATATCTCGATTCCCATCCCGTACAGAAGCAGTTAACGGATACGTTGTCTGAAACAGTAAGAA
ATTACCCAACTCCGATTTCGGCGAAGCAAGATAAGCCAGTTTCTATTGCTGTGGTTTATCCTGGGCAGCAGATTTCGGAC
TATTGGGTTCGAAATATCAAAGCTTTTGAAACTCGTTTAGAAAAGTTAGGAATCAGCTACAAGATAAACCAAGTTTTTAC
TCGGCCGAATCTCGATGTCAGACAACAAAGTCTTTCGTTGCTTGAAGCGGTTCAAAATAAAGCTGACTACTTGATATTCA
CGCTTGACACGACTCGTCACCGCAAATTTATTGAACATGTTTTGAGTTCAACCGATACCAAGCTCATTCTGCAAAATATT
ACGACCCCTGTTAGAGCTTGGGACGATCAGCAACCCTTCATGTATGTGGGGTTCGATCACATCAAAGGCGCTCGAATTCT
TGAGCAGTACTACAAAGACACCATCCCTAAAGAAAGCCGTTACTCGGTGCTTTACTTTTCTGAAGGTTACGTGAGTGATG
CTCGTGGTGACACGTTCATTGAAGAGATGAGTCATCATGATTCGTACAAGCTATCTTCATCGTATTACACCACAGCAACT
CGAGAATCTGGGTTTAATGCTGCGGTTAAAGCGATAGAGAAAGATCCAAGTATCTCCTTCATATATGCGTGCTCTACAGA
TGTTGCCTTAGGAGCTGTAGAAGCACTTAAATCGATGAAGAGAGAGGATATTCTTATTAATGGTTGGGGTGGTGGTAGCG
CCGAGTTGGAGGCTATTTCTAAAGGCGATCTAGATGTTACAGCCATGAGAATGAATGATGACACTGGTATTGCTATGGCA
GAAGCTATTAAGTGGGATCTTGAAGGTAAAGATGTACCGCACGTCTACTCTGGTGACTTTGAAATAGTGACCAAGGCGGA
CAGTCCTTCAAAAGTTGAGAAATTAAAGCAGAGAGCGTTTAGGTACTCGGATCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.722

98.63

0.638

Multiple sequence alignment