Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   IX92_RS10595 Genome accession   NZ_CP009617
Coordinates   2322803..2324197 (-) Length   464 a.a.
NCBI ID   WP_019275536.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE98     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2317803..2329197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX92_RS10560 (IX92_10560) moaE 2318496..2318951 (-) 456 WP_006963011.1 molybdopterin synthase catalytic subunit MoaE -
  IX92_RS10565 (IX92_10565) moaD 2318951..2319196 (-) 246 WP_043008833.1 molybdopterin synthase sulfur carrier subunit -
  IX92_RS10570 (IX92_10570) moaC 2319193..2319672 (-) 480 WP_006963013.1 cyclic pyranopterin monophosphate synthase MoaC -
  IX92_RS10575 (IX92_10575) moaB 2319685..2320197 (-) 513 WP_043008834.1 molybdenum cofactor biosynthesis protein B -
  IX92_RS10580 (IX92_10580) moaA 2320287..2321276 (-) 990 WP_021458192.1 GTP 3',8-cyclase MoaA -
  IX92_RS10585 (IX92_10585) - 2321582..2322469 (+) 888 WP_019275535.1 YvcK family protein -
  IX92_RS10590 (IX92_10590) luxU 2322455..2322799 (-) 345 WP_029236080.1 quorum-sensing phosphorelay protein LuxU -
  IX92_RS10595 (IX92_10595) luxO 2322803..2324197 (-) 1395 WP_019275536.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  IX92_RS10600 (IX92_10600) uvrB 2324461..2326491 (-) 2031 WP_006963019.1 excinuclease ABC subunit UvrB -
  IX92_RS10610 (IX92_10610) - 2327518..2328099 (+) 582 WP_043008836.1 outer membrane beta-barrel protein -
  IX92_RS28940 - 2328173..2328613 (-) 441 WP_129542192.1 polymer-forming cytoskeletal protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51738.07 Da        Isoelectric Point: 5.8826

>NTDB_id=130778 IX92_RS10595 WP_019275536.1 2322803..2324197(-) (luxO) [Vibrio coralliilyticus strain RE98]
MQHNTQTQKSKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDVLHAVKQKM
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSHTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKDFVRLAPEVVSRFAQYEWPGNVRQLQNVLRNVVVLNNGENISMDMLPPPLNQPVENQI
RVDLQDKDSFSVHDIFPLWLTEKKAIEQAIQACEGNIPKAAGYLDVSPSTLYRKLQNWNTKETQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=130778 IX92_RS10595 WP_019275536.1 2322803..2324197(-) (luxO) [Vibrio coralliilyticus strain RE98]
ATGCAACATAATACGCAAACACAAAAGTCCAAATATCTTTTGATGGTTGAAGATACTGCGTCGGTCGCGGCGTTGTACCG
TTCTTATCTCACCCCTTTGGGTATCGATATCAACATCGTTGGTACCGGGCGTGATGCCATTGAAAGCCTCAACTTTCGCA
CTCCTGATTTAATCCTATTGGACCTTCGTCTTCCCGACATGACAGGTATGGATGTTTTGCATGCAGTGAAACAGAAAATG
CCTGATGTTCCAGTGATATTCATGACTGCCCACGGCTCGATTGATACCGCTGTAGAAGCGATGCGCCATGGTGCTCAGGA
TTTCCTTATCAAACCGTGTGAAGCAGACCGACTTCGTGTCACGGTTAACAACGCTATTCGCAAAGCGACCAAGTTGAAAA
ATGAAGCTGATAATCCGGGCAACCAGAATTATCAAGGCTTTATCGGTAGTAGCCACACTATGCAGGCTGTGTATCGTACC
ATCGACTCCGCCGCATCCAGTAAAGCCAGTATTTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTGTGTGCAGAGGC
CATTCATGCGGCAAGTAAGCGTGGTGACAAGCCCTTCATCGCGATCAACTGTGCGGCTATTCCAAAAGATCTGATTGAAA
GTGAATTGTTTGGTCATGTGAAAGGCGCGTTTACCGGCGCTGCCACTGATCGACAAGGCGCGGCTGAGTTGGCTGATGGA
GGCACGCTGTTCCTTGACGAACTGTGTGAGATGGATCTGGATCTGCAAACTAAGCTACTACGTTTTATTCAGACGGGTAC
CTTCCAGAAAGTCGGCTCTTCGAAAATGAAAAGCGTCGACGTGCGTTTCGTCTGCGCAACCAACCGAGACCCTTGGAAAG
AGGTGCAGGAAGGTCGCTTCCGTGAAGACTTATATTATCGTTTATACGTAATTCCTTTGCACCTACCTCCTTTGAGGGAG
CGTGGCGATGATGTCATAGAAATTGCTTATTCTCTGCTAGGCTTTATGTCTAAAGAGGAAGGAAAAGACTTTGTCCGACT
GGCACCAGAAGTTGTAAGCCGCTTCGCTCAATACGAGTGGCCGGGTAATGTTCGTCAATTGCAAAACGTACTGAGAAACG
TCGTGGTTCTTAACAACGGTGAAAACATCTCCATGGATATGTTGCCGCCTCCATTGAATCAGCCGGTCGAAAATCAGATC
AGGGTAGACTTGCAGGACAAAGACAGTTTTTCTGTGCATGACATTTTCCCTCTGTGGTTAACAGAGAAGAAAGCTATTGA
GCAAGCGATTCAGGCCTGTGAAGGGAATATTCCTAAAGCCGCGGGCTATTTAGACGTCAGTCCATCAACGCTTTATCGCA
AGCTGCAAAACTGGAACACGAAGGAAACACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-457)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.946

96.552

0.849
  pilR Pseudomonas aeruginosa PAK

38.085

96.767

0.369

Multiple sequence alignment