Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   NF38_RS03560 Genome accession   NZ_CP009610
Coordinates   701997..702536 (-) Length   179 a.a.
NCBI ID   WP_011272006.1    Uniprot ID   Q4QNH6
Organism   Haemophilus influenzae strain Hi375     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 696997..707536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF38_RS03530 (NF38_03530) fdx 697400..697741 (+) 342 WP_005656373.1 ISC system 2Fe-2S type ferredoxin -
  NF38_RS03535 (NF38_03535) iscX 697741..697935 (+) 195 WP_005659903.1 Fe-S cluster assembly protein IscX -
  NF38_RS03540 (NF38_03540) - 697986..698600 (-) 615 WP_011272010.1 YfgM family protein -
  NF38_RS03545 (NF38_03545) hisS 698618..699889 (-) 1272 WP_038440737.1 histidine--tRNA ligase -
  NF38_RS03550 (NF38_03550) ispG 699899..701005 (-) 1107 WP_011272008.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  NF38_RS03555 (NF38_03555) - 701014..701925 (-) 912 WP_011272007.1 RodZ family helix-turn-helix domain-containing protein -
  NF38_RS03560 (NF38_03560) pilF/pilF2 701997..702536 (-) 540 WP_011272006.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  NF38_RS03565 (NF38_03565) - 702636..703787 (-) 1152 WP_042599461.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  NF38_RS03570 (NF38_03570) - 704034..704912 (+) 879 WP_038440739.1 D-alanyl-D-alanine carboxypeptidase family protein -
  NF38_RS09405 (NF38_03575) - 704950..705099 (-) 150 WP_162627968.1 hypothetical protein -
  NF38_RS03580 (NF38_03580) - 705426..706286 (+) 861 WP_224056855.1 metal ABC transporter substrate-binding protein -
  NF38_RS03585 (NF38_03585) - 706286..707206 (+) 921 WP_005630123.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 20554.24 Da        Isoelectric Point: 8.9421

>NTDB_id=130693 NF38_RS03560 WP_011272006.1 701997..702536(-) (pilF/pilF2) [Haemophilus influenzae strain Hi375]
MQTISKQLSAVIFPFIFSACVSQSASSLDHQAAAKARVELALSYLQQNNPQLAKINLDKALQHDKNYYLVHSALAHYYQQ
QGQIENAFREYEIAVKLNHKQGDVHNNFGTFLCSQKKFEQAQQQFELALNSPNYYHQADTFENIALCAYSAKKMDIYQQT
LEKLRQINGKRAEKFNSLK

Nucleotide


Download         Length: 540 bp        

>NTDB_id=130693 NF38_RS03560 WP_011272006.1 701997..702536(-) (pilF/pilF2) [Haemophilus influenzae strain Hi375]
ATGCAAACAATAAGTAAACAACTAAGTGCGGTTATTTTCCCTTTCATTTTTTCTGCCTGCGTTTCACAATCTGCGTCTAG
CTTAGATCATCAAGCTGCCGCCAAAGCGCGAGTGGAACTCGCTTTGAGCTATCTTCAGCAAAATAATCCTCAACTGGCTA
AAATCAATTTAGACAAAGCACTTCAACACGATAAAAATTACTATCTCGTACATTCAGCACTTGCACATTATTATCAACAA
CAAGGGCAAATAGAAAATGCCTTTCGTGAGTATGAAATAGCCGTAAAACTTAATCATAAACAAGGCGATGTACATAATAA
TTTTGGTACGTTTCTATGTAGTCAAAAGAAATTTGAGCAAGCCCAGCAACAATTTGAATTAGCCCTTAATTCGCCGAATT
ATTATCATCAAGCAGATACATTTGAAAATATCGCGCTTTGTGCTTATTCCGCGAAAAAAATGGATATTTATCAGCAAACA
TTAGAAAAATTACGTCAAATCAATGGAAAACGTGCGGAAAAATTCAATAGTCTAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QNH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

96.089

100

0.961
  pilF Glaesserella parasuis strain SC1401

45.251

100

0.453

Multiple sequence alignment