Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | NF38_RS02880 | Genome accession | NZ_CP009610 |
| Coordinates | 585934..586440 (+) | Length | 168 a.a. |
| NCBI ID | WP_011272049.1 | Uniprot ID | Q4QNA7 |
| Organism | Haemophilus influenzae strain Hi375 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 580934..591440
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NF38_RS02860 (NF38_02860) | - | 581027..581356 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| NF38_RS02865 (NF38_02865) | - | 581525..582370 (-) | 846 | WP_011272052.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| NF38_RS02870 (NF38_02870) | - | 582443..585037 (-) | 2595 | WP_011272051.1 | penicillin-binding protein 1A | - |
| NF38_RS02875 (NF38_02875) | comA | 585136..585933 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| NF38_RS02880 (NF38_02880) | comB | 585934..586440 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| NF38_RS02885 (NF38_02885) | comC | 586437..586958 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| NF38_RS02890 (NF38_02890) | comD | 586955..587368 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| NF38_RS02895 (NF38_02895) | comE | 587378..588715 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| NF38_RS02900 (NF38_02900) | - | 588728..589414 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| NF38_RS02905 (NF38_02905) | nfuA | 589490..590086 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| NF38_RS02910 (NF38_02910) | nudC | 590153..590947 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19697.54 Da Isoelectric Point: 7.4684
>NTDB_id=130688 NF38_RS02880 WP_011272049.1 585934..586440(+) (comB) [Haemophilus influenzae strain Hi375]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=130688 NF38_RS02880 WP_011272049.1 585934..586440(+) (comB) [Haemophilus influenzae strain Hi375]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comB | Haemophilus influenzae Rd KW20 |
98.81 |
100 |
0.988 |