Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | NF38_RS02890 | Genome accession | NZ_CP009610 |
| Coordinates | 586955..587368 (+) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain Hi375 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 581955..592368
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NF38_RS02870 (NF38_02870) | - | 582443..585037 (-) | 2595 | WP_011272051.1 | penicillin-binding protein 1A | - |
| NF38_RS02875 (NF38_02875) | comA | 585136..585933 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| NF38_RS02880 (NF38_02880) | comB | 585934..586440 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| NF38_RS02885 (NF38_02885) | comC | 586437..586958 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| NF38_RS02890 (NF38_02890) | comD | 586955..587368 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| NF38_RS02895 (NF38_02895) | comE | 587378..588715 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| NF38_RS02900 (NF38_02900) | - | 588728..589414 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| NF38_RS02905 (NF38_02905) | nfuA | 589490..590086 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| NF38_RS02910 (NF38_02910) | nudC | 590153..590947 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| NF38_RS02915 (NF38_02915) | - | 590983..591573 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| NF38_RS02920 (NF38_02920) | - | 591713..591985 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=130690 NF38_RS02890 WP_011272047.1 586955..587368(+) (comD) [Haemophilus influenzae strain Hi375]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=130690 NF38_RS02890 WP_011272047.1 586955..587368(+) (comD) [Haemophilus influenzae strain Hi375]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |