Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LX00_RS16715 Genome accession   NZ_CP009534
Coordinates   3524051..3524869 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Strain AbH12O-A2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3519051..3529869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LX00_RS16700 (LX00_16990) pilE 3519268..3519693 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  LX00_RS16705 (LX00_16995) pilY2 3519690..3520172 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  LX00_RS16710 (LX00_17000) pilY1 3520185..3524039 (-) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  LX00_RS16715 (LX00_17005) pilX 3524051..3524869 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LX00_RS16720 (LX00_17010) pilW 3524866..3525867 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  LX00_RS16725 (LX00_17015) pilV 3525868..3526428 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LX00_RS16730 (LX00_17020) fimU 3526422..3526895 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LX00_RS16735 (LX00_17025) ispH 3527065..3528015 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LX00_RS16740 (LX00_17030) gmk 3528138..3528767 (+) 630 WP_000015937.1 guanylate kinase -
  LX00_RS16745 (LX00_17035) rpoZ 3528840..3529118 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LX00_RS18970 - 3529157..3529287 (+) 131 Protein_3296 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=129944 LX00_RS16715 WP_000149374.1 3524051..3524869(-) (pilX) [Acinetobacter baumannii strain Strain AbH12O-A2]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=129944 LX00_RS16715 WP_000149374.1 3524051..3524869(-) (pilX) [Acinetobacter baumannii strain Strain AbH12O-A2]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment