Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ACJ74_RS10860 Genome accession   NZ_CP011915
Coordinates   2151697..2152434 (-) Length   245 a.a.
NCBI ID   WP_088895527.1    Uniprot ID   -
Organism   Escherichia coli strain PSUO2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2146697..2157434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJ74_RS10830 (ACJ74_10475) yfiL 2146855..2147220 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  ACJ74_RS10835 (ACJ74_10480) aroF 2147430..2148500 (+) 1071 WP_001168027.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ACJ74_RS10840 (ACJ74_10485) tyrA 2148511..2149632 (+) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ACJ74_RS10845 (ACJ74_10490) pheA 2149675..2150835 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  ACJ74_RS26020 pheL 2150934..2150981 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ACJ74_RS10850 (ACJ74_10495) raiA 2151085..2151426 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ACJ74_RS10860 (ACJ74_10505) comL 2151697..2152434 (-) 738 WP_088895527.1 outer membrane protein assembly factor BamD Machinery gene
  ACJ74_RS10865 (ACJ74_10510) rluD 2152569..2153549 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACJ74_RS10870 (ACJ74_10515) yfiH 2153546..2154277 (+) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  ACJ74_RS10875 (ACJ74_10520) clpC 2154407..2156980 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27928.53 Da        Isoelectric Point: 7.1589

>NTDB_id=129825 ACJ74_RS10860 WP_088895527.1 2151697..2152434(-) (comL) [Escherichia coli strain PSUO2]
MTRMKYLVAAATLSLFLAGCSRSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=129825 ACJ74_RS10860 WP_088895527.1 2151697..2152434(-) (comL) [Escherichia coli strain PSUO2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGAGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371