Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LG36_RS10925 Genome accession   NZ_CP009472
Coordinates   2260881..2261372 (-) Length   163 a.a.
NCBI ID   WP_038602405.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2255881..2266372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS10925 (LG36_2084) comX 2260881..2261372 (-) 492 WP_038602405.1 hypothetical protein Regulator
  LG36_RS10930 (LG36_2085) ezrA 2261631..2263361 (-) 1731 WP_021723359.1 septation ring formation regulator EzrA -
  LG36_RS10935 (LG36_2086) tsf 2263566..2264594 (-) 1029 WP_010906339.1 translation elongation factor Ts -
  LG36_RS10940 (LG36_2087) rpsB 2264716..2265483 (-) 768 WP_038602408.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19734.58 Da        Isoelectric Point: 5.6148

>NTDB_id=129668 LG36_RS10925 WP_038602405.1 2260881..2261372(-) (comX) [Lactococcus lactis strain AI06]
MTYYLEEEGFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMERYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=129668 LG36_RS10925 WP_038602405.1 2260881..2261372(-) (comX) [Lactococcus lactis strain AI06]
ATGACATATTACTTGGAAGAAGAGGGTTTTGAAAATCTGTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGTATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATTGATGAGCTAAGACGGAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAATTAACTCGTATGGAACGATATCGCCTTCGTGAAAAAATAAAAGCCATCTTATTTTCAGAA
GATGAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.16

100

0.982
  comX Lactococcus lactis subsp. cremoris KW2

76.687

100

0.767

Multiple sequence alignment