Detailed information    

insolico Bioinformatically predicted

Overview


Name   mecA   Type   Regulator
Locus tag   LG36_RS09125 Genome accession   NZ_CP009472
Coordinates   1913679..1914380 (-) Length   233 a.a.
NCBI ID   WP_004255173.1    Uniprot ID   S6FFV7
Organism   Lactococcus lactis strain AI06     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 1908679..1919380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS09105 (LG36_1745) - 1908788..1910005 (-) 1218 WP_038601847.1 cysteine desulfurase -
  LG36_RS09110 (LG36_1746) sufD 1910005..1911261 (-) 1257 WP_038601850.1 Fe-S cluster assembly protein SufD -
  LG36_RS09115 (LG36_1747) sufC 1911399..1912169 (-) 771 WP_038601853.1 Fe-S cluster assembly ATPase SufC -
  LG36_RS09120 (LG36_1748) - 1912345..1913676 (-) 1332 WP_038601856.1 glycosyltransferase family 4 protein -
  LG36_RS09125 (LG36_1749) mecA 1913679..1914380 (-) 702 WP_004255173.1 adaptor protein MecA Regulator
  LG36_RS09130 (LG36_1750) - 1914510..1915244 (-) 735 WP_038601859.1 amino acid ABC transporter ATP-binding protein -
  LG36_RS09135 (LG36_1751) - 1915244..1915930 (-) 687 WP_004255158.1 amino acid ABC transporter permease -
  LG36_RS09140 (LG36_1752) - 1916078..1916986 (-) 909 WP_038601862.1 diacylglycerol kinase family protein -

Sequence


Protein


Download         Length: 233 a.a.        Molecular weight: 27077.46 Da        Isoelectric Point: 4.1246

>NTDB_id=129651 LG36_RS09125 WP_004255173.1 1913679..1914380(-) (mecA) [Lactococcus lactis strain AI06]
MKYEDINENTIKITLSFDDLTDYDIKLSDFFGNQEVIEQFFYELVDELGLENRFGNVGMLTFQIQPFPQGVHMIVHEEAM
LGEGGEIPDDPEEFEELMTGFYNKLNEIGADMARERGITDFKPGLGLPGTKKDEAEQEPDFIYYSIRYEDIMSVLTGIKN
VKFADEESEFYRYDGNFYLVVLDNQKEKGKMHVESTRSRMMEYGEATKMSREFLQEYGECLIATRALDVLRKI

Nucleotide


Download         Length: 702 bp        

>NTDB_id=129651 LG36_RS09125 WP_004255173.1 1913679..1914380(-) (mecA) [Lactococcus lactis strain AI06]
ATGAAATATGAGGATATAAACGAAAATACTATAAAAATCACCTTGTCTTTTGATGATTTGACAGATTATGACATCAAATT
ATCAGACTTTTTCGGAAATCAAGAAGTCATTGAACAATTTTTCTATGAATTGGTTGATGAGCTTGGTTTAGAAAATCGCT
TTGGAAATGTGGGAATGTTAACTTTCCAAATCCAACCTTTTCCTCAAGGTGTTCATATGATTGTTCATGAAGAAGCGATG
CTAGGTGAAGGTGGAGAAATTCCAGATGACCCAGAAGAGTTTGAAGAATTGATGACTGGTTTTTATAATAAATTAAATGA
AATAGGGGCAGATATGGCGCGCGAGCGAGGAATTACTGATTTTAAACCTGGGCTTGGTTTACCAGGAACAAAAAAAGACG
AAGCTGAACAAGAGCCAGATTTTATTTATTACTCTATTCGTTATGAAGATATTATGTCTGTCTTAACAGGAATAAAAAAT
GTGAAGTTTGCTGATGAAGAATCAGAGTTTTATCGTTATGATGGCAATTTTTATCTTGTTGTTTTGGATAATCAAAAAGA
AAAAGGCAAGATGCATGTTGAAAGTACCCGTTCACGAATGATGGAATATGGGGAAGCAACAAAAATGAGTCGAGAATTTT
TGCAGGAGTATGGTGAATGTCTTATTGCGACACGTGCTTTAGATGTTCTTAGAAAAATCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB S6FFV7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Lactococcus lactis subsp. lactis strain DGCC12653

99.571

100

0.996

  mecA Lactococcus lactis subsp. cremoris KW2

96.996

100

0.97


Multiple sequence alignment