Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LA59_RS10170 Genome accession   NZ_CP009467
Coordinates   2254685..2256106 (+) Length   473 a.a.
NCBI ID   WP_050939029.1    Uniprot ID   -
Organism   Vibrio harveyi strain ATCC 33843 (392 [MAV])     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2249685..2261106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA59_RS10150 (LA59_10135) - 2250011..2250622 (-) 612 WP_017190319.1 flavin reductase family protein -
  LA59_RS10155 (LA59_10140) - 2251358..2252053 (+) 696 WP_069687231.1 NAD(P)H-binding protein -
  LA59_RS10160 (LA59_10145) - 2252248..2253621 (+) 1374 WP_029791108.1 L-cystine transporter -
  LA59_RS10165 (LA59_10150) - 2253843..2254523 (+) 681 WP_069687569.1 DUF1826 domain-containing protein -
  LA59_RS10170 (LA59_10155) sbcB 2254685..2256106 (+) 1422 WP_050939029.1 exodeoxyribonuclease I Machinery gene
  LA59_RS10175 (LA59_10160) - 2256165..2256539 (+) 375 WP_005445537.1 CidA/LrgA family protein -
  LA59_RS10180 (LA59_10165) - 2256541..2257218 (+) 678 WP_009705896.1 LrgB family protein -
  LA59_RS10185 (LA59_10170) cdd 2257484..2258371 (+) 888 WP_069687232.1 cytidine deaminase -
  LA59_RS10190 (LA59_10175) purT 2258519..2259694 (+) 1176 WP_009697365.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  LA59_RS10195 (LA59_10180) - 2259771..2260421 (-) 651 WP_069687233.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54583.94 Da        Isoelectric Point: 4.9808

>NTDB_id=129587 LA59_RS10170 WP_050939029.1 2254685..2256106(+) (sbcB) [Vibrio harveyi strain ATCC 33843 (392 [MAV])]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGIRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=129587 LA59_RS10170 WP_050939029.1 2254685..2256106(+) (sbcB) [Vibrio harveyi strain ATCC 33843 (392 [MAV])]
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGCATTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTGATGTACTGTCGTCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCTGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGCGCATGTCATGCCCTGCGTCCTGAAGGCGTAGAGTGGCCAGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAACATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGACGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTAGTGCACCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACGTTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGCTTTTTCTCGCCTGCTG
ATCGCGCTGCGATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.07

100

0.791

Multiple sequence alignment