Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   FORC16_RS13180 Genome accession   NZ_CP011775
Coordinates   2898993..2901197 (+) Length   734 a.a.
NCBI ID   WP_060530649.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_016     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2893993..2906197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC16_RS13160 (FORC16_2583) - 2895153..2896319 (-) 1167 WP_060530650.1 O-succinylhomoserine (thiol)-lyase -
  FORC16_RS13165 (FORC16_2584) metJ 2896531..2896848 (+) 318 WP_011079338.1 met regulon transcriptional regulator MetJ -
  FORC16_RS13170 (FORC16_2585) - 2896935..2898212 (-) 1278 WP_011079337.1 malic enzyme-like NAD(P)-binding protein -
  FORC16_RS13175 (FORC16_2586) rpmE 2898491..2898712 (-) 222 WP_011079336.1 50S ribosomal protein L31 -
  FORC16_RS13180 (FORC16_2587) priA 2898993..2901197 (+) 2205 WP_060530649.1 primosomal protein N' Machinery gene
  FORC16_RS13185 (FORC16_2588) cytR 2901426..2902433 (+) 1008 WP_011079334.1 DNA-binding transcriptional regulator CytR Regulator
  FORC16_RS13190 (FORC16_2589) - 2902543..2903100 (+) 558 WP_045620694.1 SPOR domain-containing protein -
  FORC16_RS13195 (FORC16_2590) hslV 2903251..2903805 (+) 555 WP_011079332.1 ATP-dependent protease subunit HslV -
  FORC16_RS13200 (FORC16_2591) hslU 2903833..2905164 (+) 1332 WP_011079331.1 HslU--HslV peptidase ATPase subunit -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 81957.53 Da        Isoelectric Point: 8.5813

>NTDB_id=129371 FORC16_RS13180 WP_060530649.1 2898993..2901197(+) (priA) [Vibrio vulnificus strain FORC_016]
MRPSIARVALPVPLDKQFDYLVPGHLFPIIGGRVSVPFGRQTLIGIVTALVQESDFPREQLKPLKAVLDHRPIWPDSVYS
LLLWCSHFYQHPLGETLHNALPAALRKGKAADFATLQEWQLTELGKNQLMQGLNSRAIKQAKVLNMLANGPLPHQAFLDE
EVASTTLRTLEEKGWVTCEEKTPQLTRWGNPIEHPVDKPKLNQEQAIAIATVNSQTDFGCYLLEGVTGSGKTEVYLNLIK
PILEQGKQALVLVPEIGLTPQTINRFRQRFDVPVAVIHSGLNDTERLNAWLSARDKAAGIVIGTRSALLIPFAQLGIIIV
DEEHDASYKQQDSLRYHARDVAVMRAAKEGIPIVLGSATPALETLHNALTGKYHHLSLTQRAGVAVPTTNKVLDVKGLYL
ESGLSAPLIAEMRRHLKAGNQVMLFLNRRGFSPALMCHECGWIAECKRCDAYYTYHQYSNEIRCHHCGSQQPIIHQCQGC
GSTQLVTVGVGTEQLENQLTALFPDYKAIRIDRDSTRRKGSLESALEAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDV
DGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEVILQTHHPEHTLLKALLTKDYRHFAQSALEERKIAQLPPFSFLTLF
RAEANHSEIVETFLRQVRMTLESHPLFDHTCLVLGPTPAPLAKRAGKYRWQLLLQTQHRSLMQKILSSTKPAIDLLPDAK
KVRWNLDIEPQDLS

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=129371 FORC16_RS13180 WP_060530649.1 2898993..2901197(+) (priA) [Vibrio vulnificus strain FORC_016]
ATGCGTCCATCCATTGCTCGTGTTGCGCTGCCAGTGCCACTCGATAAACAATTTGATTATCTCGTTCCTGGACACCTTTT
TCCGATCATTGGTGGTCGCGTGAGTGTGCCATTTGGACGACAAACCTTGATTGGTATTGTCACCGCTTTGGTTCAAGAAT
CAGACTTTCCACGCGAGCAACTTAAACCCCTTAAAGCGGTGTTGGATCATCGTCCTATTTGGCCCGATTCCGTCTACAGT
TTATTACTTTGGTGTAGCCACTTTTACCAACATCCCCTAGGTGAAACACTGCATAACGCCCTCCCTGCTGCACTAAGAAA
AGGAAAAGCGGCTGACTTTGCCACTCTACAAGAATGGCAACTGACCGAGTTAGGCAAAAACCAGTTGATGCAAGGGTTAA
ACAGTCGCGCGATAAAGCAAGCGAAAGTATTGAATATGCTTGCTAATGGCCCTCTGCCTCACCAGGCCTTTCTAGATGAG
GAAGTGGCATCCACAACCTTGCGCACCTTGGAAGAAAAAGGCTGGGTCACCTGTGAAGAAAAAACGCCACAGTTAACTCG
TTGGGGGAATCCGATTGAACATCCCGTCGATAAGCCGAAACTCAACCAAGAGCAAGCCATTGCCATTGCCACCGTTAACA
GCCAGACAGACTTTGGCTGTTATCTGTTGGAAGGGGTCACAGGTTCAGGCAAAACCGAAGTTTATCTCAACTTGATCAAA
CCCATTTTGGAACAAGGCAAACAGGCTCTGGTGTTGGTCCCTGAAATTGGTTTAACACCACAAACCATCAATCGTTTTCG
TCAACGGTTTGATGTGCCAGTCGCCGTCATCCATTCTGGTCTTAATGATACGGAACGTCTCAACGCTTGGCTTTCCGCAC
GAGATAAAGCGGCGGGCATTGTCATTGGTACACGCTCTGCACTACTGATCCCATTTGCCCAGCTAGGGATCATCATTGTC
GATGAAGAGCACGACGCTTCGTACAAACAGCAAGATAGCTTGCGTTACCATGCTCGCGATGTGGCTGTGATGCGAGCGGC
AAAAGAAGGCATTCCAATTGTTCTCGGTTCAGCCACACCCGCGTTAGAAACCTTACACAACGCACTTACGGGCAAATATC
ATCATCTCTCGCTAACCCAACGAGCAGGAGTGGCCGTACCAACCACCAACAAAGTGCTGGATGTCAAAGGGCTCTATCTG
GAAAGCGGCCTCTCAGCGCCACTCATTGCTGAAATGCGTCGTCATTTAAAAGCAGGCAATCAGGTGATGCTGTTTCTCAA
CCGTCGAGGCTTCTCCCCTGCGTTAATGTGTCATGAATGTGGTTGGATTGCCGAATGCAAACGCTGCGATGCCTATTACA
CTTATCACCAGTACAGCAATGAAATCCGCTGTCACCACTGTGGTTCTCAACAACCTATTATCCATCAATGCCAAGGTTGT
GGTTCGACACAACTGGTGACGGTTGGTGTCGGCACTGAGCAACTGGAAAACCAGTTGACGGCCCTGTTTCCCGACTACAA
AGCGATTCGCATCGACCGCGATAGCACACGACGCAAAGGCAGCCTCGAAAGCGCTTTAGAAGCCATTCGCAAAGGGGAAT
ACCAAATTTTAATTGGCACGCAAATGCTGGCTAAAGGGCATCATTTCCCAGACGTGACGTTAGTGGCACTGTTGGATGTG
GATGGGTCACTGTACAGCAGTGATTTCCGAGCGTCCGAACGATTGGCTCAGTTGTTTATTCAAGTGGCCGGACGAGCAGG
GCGTGCTAGCAAACCTGGCGAAGTGATATTACAAACCCACCATCCAGAACACACCTTGCTCAAAGCTCTGTTGACCAAGG
ATTACCGGCATTTTGCGCAGTCTGCACTGGAAGAACGGAAAATTGCCCAACTTCCCCCGTTTAGTTTTCTAACGCTATTT
CGCGCAGAAGCCAATCACAGCGAAATCGTCGAAACATTCTTACGTCAAGTGCGTATGACTCTCGAGTCTCATCCCTTGTT
TGATCACACTTGTCTCGTACTCGGTCCAACACCCGCTCCACTGGCCAAACGTGCGGGCAAATACCGCTGGCAGCTTCTGC
TTCAAACTCAACATCGTTCCTTGATGCAGAAAATACTCTCGAGCACGAAACCTGCTATCGATTTGTTACCAGATGCGAAA
AAAGTACGTTGGAATTTGGATATTGAGCCGCAGGATCTGAGTTAG

Domains

Predicted by InterProScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(7-102)

DEAD/DEAH box helicase (DEAD)

(205-364)

Primosomal protein N C-terminal domain (PriA_C)

(633-730)

Helicase conserved C-terminal domain (Helicase_C)

(514-589)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(446-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

43.342

100

0.435

Multiple sequence alignment