Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JT31_RS04790 Genome accession   NZ_CP009451
Coordinates   1060364..1060993 (-) Length   209 a.a.
NCBI ID   WP_038473931.1    Uniprot ID   A0A089PVC8
Organism   Cedecea neteri strain SSMD04     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1055364..1065993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JT31_RS04775 (JT31_04930) helD 1055597..1057651 (-) 2055 WP_038473922.1 DNA helicase IV -
  JT31_RS04780 (JT31_04935) - 1057782..1058228 (+) 447 WP_038473925.1 YccF domain-containing protein -
  JT31_RS04785 (JT31_04940) yccS 1058238..1060379 (+) 2142 WP_038473928.1 YccS family putative transporter -
  JT31_RS04790 (JT31_04945) sxy/tfoX 1060364..1060993 (-) 630 WP_038473931.1 TfoX/Sxy family DNA transformation protein Regulator
  JT31_RS04795 (JT31_04950) sulA 1061211..1061720 (+) 510 WP_038473934.1 SOS-induced cell division inhibitor SulA -
  JT31_RS04800 (JT31_04955) ompA 1062078..1063154 (+) 1077 WP_038473936.1 porin OmpA -
  JT31_RS04805 (JT31_04960) matP 1063248..1063700 (-) 453 WP_038473939.1 macrodomain Ter protein MatP -
  JT31_RS04810 (JT31_04965) - 1063877..1065631 (+) 1755 WP_038482800.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24039.94 Da        Isoelectric Point: 9.6451

>NTDB_id=129342 JT31_RS04790 WP_038473931.1 1060364..1060993(-) (sxy/tfoX) [Cedecea neteri strain SSMD04]
MKDVTFLRIHKSQEYLSSLGKIGCRPLFGGYSLTVEGVVFAMVAKGELYLRACEQCADYFSQKSSSPLMYRKRGLPVALN
YYHVDEELWDNPDKLVELSILALRNAQREKTQIKIRSRRLKDLPNLSLNIEVMLCEVGIKDPQTLQLFGAKRSWLKIRST
RATVGIKVLLALAGAIQGVHEAVLPLEVRNELTEWWRRYEQRQPSYSEH

Nucleotide


Download         Length: 630 bp        

>NTDB_id=129342 JT31_RS04790 WP_038473931.1 1060364..1060993(-) (sxy/tfoX) [Cedecea neteri strain SSMD04]
ATGAAGGATGTTACGTTTCTTAGAATTCATAAATCACAGGAATATCTTTCTTCGCTGGGTAAAATTGGTTGTCGGCCGCT
ATTTGGTGGTTACAGCCTGACTGTCGAAGGGGTCGTCTTTGCTATGGTGGCGAAAGGCGAGCTTTATTTGCGTGCCTGTG
AACAGTGTGCAGATTATTTCAGCCAAAAATCGTCATCACCTCTCATGTACAGGAAAAGAGGACTTCCTGTGGCATTAAAT
TACTATCATGTGGATGAAGAACTCTGGGATAACCCGGACAAACTTGTCGAGCTTTCCATTCTGGCATTACGAAACGCCCA
GCGTGAGAAAACGCAGATAAAGATACGTTCCCGGCGGCTTAAAGATCTCCCTAATCTTTCTTTAAATATAGAAGTCATGC
TTTGCGAAGTGGGGATCAAAGATCCGCAAACTCTGCAGCTTTTCGGTGCCAAAAGGTCATGGTTAAAAATACGCAGCACG
AGGGCAACTGTGGGTATTAAAGTACTGCTTGCACTCGCGGGAGCCATTCAAGGTGTCCATGAGGCGGTACTCCCTTTAGA
GGTTCGAAATGAATTGACGGAGTGGTGGCGCCGCTATGAGCAGCGCCAGCCTTCCTATTCGGAGCACTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-195)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A089PVC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

53.846

93.301

0.502

Multiple sequence alignment