Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PODO_RS29670 Genome accession   NZ_CP009428
Coordinates   6796424..6796930 (-) Length   168 a.a.
NCBI ID   WP_036677780.1    Uniprot ID   A0AA95LKX1
Organism   Paenibacillus odorifer strain DSM 15391     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6791424..6801930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PODO_RS29655 (PODO_30485) opp4A 6791752..6793470 (-) 1719 WP_036677787.1 oligopeptide ABC transporter substrate-binding protein -
  PODO_RS29660 (PODO_30490) - 6793664..6795613 (-) 1950 WP_038573963.1 DNA mismatch repair protein MutS -
  PODO_RS29665 (PODO_30495) rpsR 6796130..6796402 (-) 273 WP_036651767.1 30S ribosomal protein S18 -
  PODO_RS29670 (PODO_30500) ssbA 6796424..6796930 (-) 507 WP_036677780.1 single-stranded DNA-binding protein Machinery gene
  PODO_RS29675 (PODO_30505) rpsF 6796979..6797263 (-) 285 WP_036677776.1 30S ribosomal protein S6 -
  PODO_RS29680 (PODO_30510) - 6797481..6797678 (+) 198 WP_036677774.1 YjzC family protein -
  PODO_RS29690 (PODO_30520) - 6798180..6798392 (-) 213 WP_036677772.1 DUF951 domain-containing protein -
  PODO_RS29695 - 6798392..6799432 (-) 1041 WP_052097399.1 mechanosensitive ion channel family protein -
  PODO_RS29700 (PODO_30530) - 6799454..6799699 (-) 246 WP_036677843.1 DUF3343 domain-containing protein -
  PODO_RS29705 (PODO_30535) yyaC 6799819..6800427 (+) 609 WP_036677770.1 spore protease YyaC -
  PODO_RS29710 (PODO_30540) - 6800399..6800899 (-) 501 WP_038573966.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18518.32 Da        Isoelectric Point: 4.8280

>NTDB_id=129246 PODO_RS29670 WP_036677780.1 6796424..6796930(-) (ssbA) [Paenibacillus odorifer strain DSM 15391]
MLNRIILIGRLTRDPELRYTPAGVAVTQFTLAVDRNFTGQNGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQSREGGNTSSGASSMPEEPAYGGGGNAGRGNNNNNFSRNNNTQDPFSGDGKPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=129246 PODO_RS29670 WP_036677780.1 6796424..6796930(-) (ssbA) [Paenibacillus odorifer strain DSM 15391]
TTGTTGAACCGTATCATTTTGATCGGACGGTTGACCCGTGACCCGGAACTTCGTTATACTCCCGCTGGTGTTGCCGTAAC
TCAATTTACGCTTGCCGTAGATCGTAACTTTACGGGCCAGAACGGTGAACGTGAGGCAGACTTCATCCCGGTTGTTACCT
GGAGACAGCTAGCAGAAACCTGTGCCAATTATTTGCGCAAAGGTCGTCTGACAGCAGTGGAAGGACGCATCCAAGTGCGG
AACTATGAGAATAACGAAGGTAAACGTGTATACGTAACTGAAGTTATTGCTGATAATGTTCGTTTCCTGGAATCTTCACA
AAGCCGTGAAGGTGGAAATACTTCAAGTGGTGCAAGTAGTATGCCTGAAGAGCCAGCATATGGTGGCGGTGGTAACGCTG
GACGCGGAAATAACAACAATAATTTCTCGCGTAACAACAATACTCAAGATCCTTTTTCGGGCGATGGTAAACCGATTGAT
ATATCGGATGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.802

100

0.577
  ssb Latilactobacillus sakei subsp. sakei 23K

49.708

100

0.506

Multiple sequence alignment