Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   M444_RS31090 Genome accession   NZ_CP011664
Coordinates   7186660..7187340 (-) Length   226 a.a.
NCBI ID   WP_037798816.1    Uniprot ID   -
Organism   Streptomyces sp. Mg1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7181660..7192340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M444_RS31070 (M444_31055) - 7181668..7183554 (-) 1887 WP_008744136.1 ABC transporter ATP-binding protein -
  M444_RS31075 (M444_31060) - 7183795..7184217 (+) 423 WP_008744137.1 DUF350 domain-containing protein -
  M444_RS31080 (M444_31065) - 7184264..7185475 (-) 1212 WP_037800192.1 acyltransferase -
  M444_RS31085 (M444_31070) - 7185481..7186524 (-) 1044 WP_037798813.1 alpha/beta hydrolase -
  M444_RS31090 (M444_31075) vraR 7186660..7187340 (-) 681 WP_037798816.1 response regulator transcription factor Regulator
  M444_RS31095 (M444_31080) - 7187337..7188686 (-) 1350 WP_047960810.1 histidine kinase -
  M444_RS31100 (M444_31085) - 7188788..7189735 (+) 948 WP_037798819.1 AEC family transporter -
  M444_RS31105 (M444_31090) - 7189732..7190334 (+) 603 WP_078899772.1 HXXEE domain-containing protein -
  M444_RS38730 - 7190401..7190793 (+) 393 WP_053065830.1 hypothetical protein -
  M444_RS31115 (M444_31100) - 7190747..7191676 (-) 930 WP_124290531.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24210.20 Da        Isoelectric Point: 5.7674

>NTDB_id=129206 M444_RS31090 WP_037798816.1 7186660..7187340(-) (vraR) [Streptomyces sp. Mg1]
MTIRVIIVDDQAMVRAGFAALLSAQADIDVVGEAPDGREGVRVARTVHPDVVLMDVRMPEMDGLAAAREILGPPPGVTHL
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVQQRPAPRKDPALRLKAL
TPRETEVLELIARGLSNQEIAAFLVVAEQTVKTHIGRVLAKLGLRDRAQAVIFAYEAGLVRPGDSA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=129206 M444_RS31090 WP_037798816.1 7186660..7187340(-) (vraR) [Streptomyces sp. Mg1]
TTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCGGGGTTCGCCGCCCTGCTCTCGGCGCAGGCCGA
CATCGATGTGGTGGGCGAGGCGCCCGACGGGCGGGAGGGGGTGCGGGTCGCCCGTACGGTCCACCCCGACGTGGTGCTGA
TGGACGTGCGCATGCCCGAGATGGACGGGCTCGCGGCGGCCCGCGAGATCCTCGGCCCGCCGCCGGGCGTGACGCACCTG
CCGAAGGTGCTGATGCTCACCACCTTCGACATCGACGACTACGTGTACGAGGCGCTGCGCGCCGGCGCCTCCGGGTTCCT
CCTCAAGGACGCCCCGCCGGCCGACCTGATCGCGGCGGTCCGGGTGGTGGCCTCGGGCGAGGCGCTGCTGGCGCCCTCGG
TGACCCGGCGGCTGATCGCCGACTTCGTCCAGCAGCGGCCGGCGCCGCGCAAGGACCCTGCGCTGCGCCTGAAGGCGCTG
ACCCCCCGGGAGACCGAGGTGCTGGAGCTGATCGCGCGCGGGCTGTCGAACCAGGAGATCGCCGCGTTCCTGGTGGTGGC
GGAACAGACGGTGAAGACGCACATCGGGCGGGTGCTGGCCAAGCTCGGCCTGCGGGACCGGGCACAGGCGGTGATCTTCG
CGTACGAGGCGGGGCTGGTGCGCCCGGGCGACAGCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(159-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.986

97.788

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

37.885

100

0.381