Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   M444_RS28540 Genome accession   NZ_CP011664
Coordinates   6565690..6566340 (-) Length   216 a.a.
NCBI ID   WP_008741147.1    Uniprot ID   A0ABZ1RGV5
Organism   Streptomyces sp. Mg1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6560690..6571340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M444_RS28525 (M444_28510) - 6562322..6563173 (-) 852 WP_037798599.1 alpha/beta fold hydrolase -
  M444_RS28530 (M444_28515) - 6563460..6564233 (+) 774 WP_008741145.1 GntR family transcriptional regulator -
  M444_RS28535 (M444_28520) - 6564438..6565592 (-) 1155 WP_008741146.1 ROK family transcriptional regulator -
  M444_RS28540 (M444_28525) vraR 6565690..6566340 (-) 651 WP_008741147.1 response regulator transcription factor Regulator
  M444_RS28545 (M444_28530) - 6566345..6567520 (-) 1176 WP_008741148.1 histidine kinase -
  M444_RS28550 (M444_28535) - 6567629..6568540 (+) 912 WP_008741149.1 ATP-binding cassette domain-containing protein -
  M444_RS28555 (M444_28540) - 6568577..6569326 (+) 750 WP_008741150.1 ABC transporter permease subunit -
  M444_RS28560 (M444_28545) - 6569367..6569801 (+) 435 WP_008741151.1 hypothetical protein -
  M444_RS28565 (M444_28550) mug 6569827..6570375 (-) 549 WP_037792965.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23187.83 Da        Isoelectric Point: 4.8419

>NTDB_id=129202 M444_RS28540 WP_008741147.1 6565690..6566340(-) (vraR) [Streptomyces sp. Mg1]
MPVTVLLVDDEPLVRAGLRAVLDAQPDIEVVGEAADGASVVPLVRQLRPDVVAMDVRMPLLDGIQATRAVLRTVDSPPKI
LVVTTFENDEYVYEALRAGADGFLLKRSRPSEIVHAVRLVAEGETLLFPAAVRALAAEYGNRGARAVLERAALTEREEAV
LRLMARGLTNVEIASELIVGTETVKSHVSAILAKLGARDRTQAVIMAYESGFVSPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=129202 M444_RS28540 WP_008741147.1 6565690..6566340(-) (vraR) [Streptomyces sp. Mg1]
ATGCCGGTTACCGTACTGCTCGTCGATGACGAACCCCTCGTGCGCGCGGGTCTGCGCGCCGTCCTGGACGCCCAGCCCGA
CATCGAGGTGGTGGGTGAGGCCGCGGACGGGGCTTCCGTGGTCCCGCTGGTCCGGCAGTTGAGGCCGGACGTGGTGGCGA
TGGACGTGCGGATGCCGCTGCTCGACGGGATCCAGGCGACCCGGGCGGTACTGCGGACCGTGGACTCCCCGCCGAAGATC
CTCGTCGTGACGACCTTCGAGAACGACGAGTACGTCTACGAGGCCCTGCGGGCGGGGGCGGACGGCTTCCTGCTGAAGCG
CTCGCGGCCCTCGGAGATCGTGCACGCGGTACGGCTGGTGGCGGAGGGCGAGACGCTGCTCTTCCCCGCCGCGGTGCGGG
CCCTGGCCGCGGAGTACGGGAACCGCGGCGCGCGGGCGGTGCTGGAGCGGGCCGCGCTGACCGAGCGGGAGGAGGCAGTG
CTGCGGCTGATGGCGCGGGGGCTGACCAACGTGGAGATCGCCTCCGAACTGATCGTCGGCACGGAGACGGTGAAGTCCCA
TGTCAGCGCGATCCTGGCGAAACTGGGGGCACGGGACCGGACGCAGGCGGTCATCATGGCGTACGAGTCGGGGTTCGTCT
CTCCCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.465

99.537

0.403
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.366

Multiple sequence alignment