Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   M444_RS19825 Genome accession   NZ_CP011664
Coordinates   4583459..4584874 (-) Length   471 a.a.
NCBI ID   WP_008743312.1    Uniprot ID   -
Organism   Streptomyces sp. Mg1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4578459..4589874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M444_RS19800 (M444_19780) - 4578836..4579396 (-) 561 WP_037794920.1 SigE family RNA polymerase sigma factor -
  M444_RS19805 (M444_19785) - 4579582..4580520 (-) 939 WP_008743308.1 A/G-specific adenine glycosylase -
  M444_RS19810 (M444_19790) - 4580517..4581158 (-) 642 WP_047960648.1 phosphatase PAP2 family protein -
  M444_RS19815 (M444_19795) - 4581319..4582137 (+) 819 WP_050779411.1 hypothetical protein -
  M444_RS19820 (M444_19800) disA 4582185..4583309 (-) 1125 WP_008743311.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  M444_RS19825 (M444_19805) radA/sms 4583459..4584874 (-) 1416 WP_008743312.1 DNA repair protein RadA Machinery gene
  M444_RS19830 (M444_19810) - 4585042..4586877 (+) 1836 WP_047960650.1 sigma-70 family RNA polymerase sigma factor -
  M444_RS19835 (M444_19815) - 4586898..4587704 (-) 807 WP_008743314.1 hypothetical protein -
  M444_RS19840 (M444_19820) - 4587768..4588697 (+) 930 WP_008743315.1 Ppx/GppA phosphatase family protein -
  M444_RS19845 (M444_19825) - 4588798..4589604 (+) 807 WP_037794906.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 49219.38 Da        Isoelectric Point: 8.2557

>NTDB_id=129175 M444_RS19825 WP_008743312.1 4583459..4584874(-) (radA/sms) [Streptomyces sp. Mg1]
MAARTSRSSAKDRPSYRCTECGYTTAKWLGRCPECQAWGTVEEMGGAPAVRTTAAGRVSAPALPIAQVDGRTATARSTGV
DELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDAHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLS
AVLGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVV
LSFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAHRLGFTHALVPVDPGKVPAGMKVTEVADMGDALRALPRGRSRAKAPERDPN

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=129175 M444_RS19825 WP_008743312.1 4583459..4584874(-) (radA/sms) [Streptomyces sp. Mg1]
ATGGCTGCCCGTACATCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGTACCGAGTGCGGGTACACCACCGCCAA
GTGGCTCGGGCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTGGAGGAGATGGGCGGCGCGCCCGCCGTGCGGACCACCG
CGGCCGGGCGGGTGTCCGCGCCCGCGCTCCCGATCGCGCAGGTCGACGGCCGGACCGCGACCGCGCGCAGCACCGGTGTG
GACGAGCTGGACCGGGTGCTCGGCGGCGGGCTCGTGCCCGGGGCCGTCGTACTGCTCGCGGGCGAGCCCGGCGTCGGCAA
GTCGACGCTGCTGCTGGACGTGGCGGCGAAGGCGGCCAGCGACGCGCACCGCACCCTGTACGTGACGGGTGAGGAGTCGG
CGAGCCAGGTGCGGCTGCGGGCCGACCGGATCAACGCGCTGAGCGATCACCTCTACCTCGCCGCCGAGACCGACCTGTCG
GCGGTGCTGGGACACCTCGACGCGGTGAAGCCCTCGCTGCTGGTCCTGGACTCCGTACAGACGGTGGCCTCCCCCGAGAT
CGACGGGGCGCCGGGCGGCATGGCCCAGGTGCGGGAGGTCGCAGGGGCGCTGATCCGGGCCTCCAAGGAACGCGGGATGG
CCACGCTGCTCGTCGGCCACGTCACCAAGGACGGGGCGATCGCCGGTCCCCGGCTGCTGGAGCACCTGGTGGATGTCGTG
CTGAGCTTCGAGGGCGACCGGCACGCGCGGCTGCGCCTGGTGCGCGGCGTGAAGAACCGGTACGGCGCGACGGACGAGGT
CGGCTGCTTCGAGCTCCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGCGCCGAGG
CGGTGCCGGGCACCTGTCTGACGGTGACGCTGGAGGGGAAGCGTCCGCTGGTCGCGGAGGTGCAGGCGCTGACGGTGGAT
TCGCAGATCCCCTCACCCCGGCGGACCACCTCCGGGCTGGAGACCTCGCGGGTCTCGATGATGCTGGCGGTGCTGGAGCA
GCGCGGCCGGATCACCGCGCTCGGCAAGCGGGACATCTACAGCGCGACCGTGGGCGGGGTGAAGCTGACCGAGCCGGCGG
CCGACCTGGCGATCGCGCTCGCGCTGGCCTCGGCCGCGAGCGACGTCCCGCTGCCGAAGAACCTGGTCGCGATCGGGGAG
GTCGGCCTGGCGGGCGAGGTGCGGCGGGTGACGGGCGTACAACGGCGGCTCGCGGAGGCGCACCGGCTGGGGTTCACGCA
CGCGCTGGTGCCGGTGGATCCGGGCAAGGTGCCGGCGGGGATGAAGGTGACCGAGGTCGCCGACATGGGTGACGCGCTAC
GGGCGCTGCCGCGCGGGCGTTCGCGTGCCAAGGCCCCCGAGCGGGACCCGAACTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(373-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

AAA domain (AAA_25)

(85-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.273

96.391

0.427
  radA Streptococcus pneumoniae Rx1

42.384

96.178

0.408
  radA Streptococcus pneumoniae D39

42.384

96.178

0.408
  radA Streptococcus pneumoniae R6

42.384

96.178

0.408
  radA Streptococcus pneumoniae TIGR4

42.384

96.178

0.408
  radA Streptococcus mitis SK321

44.235

90.234

0.399
  radA Streptococcus mitis NCTC 12261

44.235

90.234

0.399