Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LC14_RS08180 Genome accession   NZ_CP009421
Coordinates   1559671..1560135 (-) Length   154 a.a.
NCBI ID   WP_011798959.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NM3683     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1554671..1565135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LC14_RS08155 (LC14_08635) - 1555955..1556227 (-) 273 WP_002212673.1 ACT domain-containing protein -
  LC14_RS08160 (LC14_08640) - 1556353..1557090 (-) 738 WP_002220248.1 toxin-antitoxin system YwqK family antitoxin -
  LC14_RS08165 (LC14_08645) prmB 1557371..1558270 (-) 900 WP_002236035.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  LC14_RS08170 (LC14_08650) - 1558415..1559008 (+) 594 WP_002220247.1 hypothetical protein -
  LC14_RS08175 (LC14_08655) - 1559120..1559557 (+) 438 Protein_1533 HK97 family phage prohead protease -
  LC14_RS08180 (LC14_08660) comE 1559671..1560135 (-) 465 WP_011798959.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16563.76 Da        Isoelectric Point: 10.8773

>NTDB_id=129143 LC14_RS08180 WP_011798959.1 1559671..1560135(-) (comE) [Neisseria meningitidis strain NM3683]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=129143 LC14_RS08180 WP_011798959.1 1559671..1560135(-) (comE) [Neisseria meningitidis strain NM3683]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment