Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABA10_RS16450 Genome accession   NZ_CP011534
Coordinates   3193851..3194486 (-) Length   211 a.a.
NCBI ID   WP_015384608.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3188851..3199486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS16430 (ABA10_16430) yvzF 3189908..3190093 (-) 186 WP_003221676.1 YvzF family protein -
  ABA10_RS16435 (ABA10_16435) gerAA 3190211..3191659 (+) 1449 WP_015483677.1 spore germination receptor protein GerAA -
  ABA10_RS16440 (ABA10_16440) gerAB 3191628..3192725 (+) 1098 WP_047183155.1 spore germination receptor protein GerAB -
  ABA10_RS16445 (ABA10_16445) gerAC 3192722..3193843 (+) 1122 WP_015384607.1 spore germination receptor protein GerAC -
  ABA10_RS16450 (ABA10_16450) vraR 3193851..3194486 (-) 636 WP_015384608.1 two-component system response regulator LiaR Regulator
  ABA10_RS16455 (ABA10_16455) liaS 3194464..3195546 (-) 1083 WP_047183156.1 two-component system sensor histidine kinase LiaS -
  ABA10_RS16460 (ABA10_16460) liaF 3195543..3196268 (-) 726 WP_015384609.1 LiaRS two-component regulatory system accessory protein LiaF -
  ABA10_RS16465 (ABA10_16465) liaG 3196302..3197174 (-) 873 WP_047183157.1 DUF4097 domain-containing protein -
  ABA10_RS16470 (ABA10_16470) liaH 3197275..3197952 (-) 678 WP_003228506.1 stress responsive protein LiaH -
  ABA10_RS16475 (ABA10_16475) liaI 3197979..3198359 (-) 381 WP_047183158.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23096.70 Da        Isoelectric Point: 4.9049

>NTDB_id=129012 ABA10_RS16450 WP_015384608.1 3193851..3194486(-) (vraR) [Bacillus subtilis strain UD1022]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIEATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=129012 ABA10_RS16450 WP_015384608.1 3193851..3194486(-) (vraR) [Bacillus subtilis strain UD1022]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGAATGGATGGCATTGAAGCTACAAAGCAAATTTGCCGGGAGCTTTCCGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCTGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCACTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTAAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.857

99.526

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

38.565

100

0.408