Detailed information NTG0129008

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LA50_RS07620
• Genome accession: NZ_CP009418
• Coordinates: 1417126..1417986 (-)
• Length: 286 a.a.
• NCBI ID: WP_002241067.1
• Uniprot ID: A1KVV2
• Organism: Neisseria meningitidis strain NM3686
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1412126..1422986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LA50_RS07590 (LA50_08005)	ispB	1412612..1413586 (+)	975	WP_002247958.1	octaprenyl diphosphate synthase	-
LA50_RS07595 (LA50_08010)	-	1413591..1414037 (+)	447	WP_002220271.1	DUF441 domain-containing protein	-
LA50_RS07605 (LA50_08020)	pilF	1414529..1416205 (+)	1677	WP_002221967.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LA50_RS07610 (LA50_08025)	-	1416290..1416499 (-)	210	WP_002216401.1	DNA gyrase inhibitor YacG	-
LA50_RS07615 (LA50_08030)	coaE	1416492..1417124 (-)	633	WP_002216402.1	dephospho-CoA kinase	-
LA50_RS07620 (LA50_08035)	pilD	1417126..1417986 (-)	861	WP_002241067.1	prepilin peptidase	Machinery gene
LA50_RS07625 (LA50_08040)	pilG	1418060..1419292 (-)	1233	WP_002216405.1	type 4 pilus assembly protein PilG	Machinery gene
LA50_RS07630 (LA50_08045)	pgi	1419802..1421445 (+)	1644	WP_002247959.1	glucose-6-phosphate isomerase	-
LA50_RS07635 (LA50_08050)	-	1421415..1421645 (+)	231	WP_025462060.1	hypothetical protein	-
LA50_RS07640 (LA50_08055)	dapD	1421655..1422476 (+)	822	WP_002220281.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31331.48 Da
• Isoelectric Point: 9.1920

>NTDB_id=129008 LA50_RS07620 WP_002241067.1 1417126..1417986(-) (pilD) [Neisseria meningitidis strain NM3686]
MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVFAKKHLNLPLTEKESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVL

Nucleotide

• Length: 861 bp

>NTDB_id=129008 LA50_RS07620 WP_002241067.1 1417126..1417986(-) (pilD) [Neisseria meningitidis strain NM3686]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCGGTGTTCGGGCTGCTGGTCGGCAGTTTCTTAAA
CGTCGTCATTTACCGCGTGCCGGTCATGATGGAACGCGGCTGGACGGTATTTGCCAAAAAACATTTAAACCTGCCGCTGA
CCGAAAAGGAAAGCCGTACCTTCAACCTGATGAAACCGGATTCCTGCTGTCCCAAATGCCGCGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGCTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTATTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACATTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACACTGCCC
TTGATTTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATGGTTCGATATGGCTTTTATGCGCGGTATATAAACTGATTAAAGGCGAAATCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCGCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCAGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGCTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-242)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

3D structure

• AlphaFold DB: A1KVV2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	96.14	99.65	0.958
pilD	Vibrio cholerae strain A1552	44.444	100	0.448
pilD	Acinetobacter baumannii D1279779	46.97	92.308	0.434
pilD	Acinetobacter nosocomialis M2	46.97	92.308	0.434
pilD	Vibrio campbellii strain DS40M4	44.565	96.503	0.43