Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LA50_RS05780 Genome accession   NZ_CP009418
Coordinates   1058044..1058508 (-) Length   154 a.a.
NCBI ID   WP_011798742.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NM3686     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1053044..1063508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA50_RS05760 (LA50_06080) rfbC 1053839..1054396 (+) 558 WP_002224368.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  LA50_RS05765 (LA50_06085) - 1054440..1056458 (-) 2019 WP_002224367.1 OPT family oligopeptide transporter -
  LA50_RS05770 (LA50_06090) dnaJ 1056654..1057775 (-) 1122 WP_002215274.1 molecular chaperone DnaJ -
  LA50_RS05780 (LA50_06100) comE 1058044..1058508 (-) 465 WP_011798742.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16605.84 Da        Isoelectric Point: 10.8773

>NTDB_id=128996 LA50_RS05780 WP_011798742.1 1058044..1058508(-) (comE) [Neisseria meningitidis strain NM3686]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=128996 LA50_RS05780 WP_011798742.1 1058044..1058508(-) (comE) [Neisseria meningitidis strain NM3686]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCGGATAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment