Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   ABA10_RS08220 Genome accession   NZ_CP011534
Coordinates   1566824..1567849 (+) Length   341 a.a.
NCBI ID   WP_014476730.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1561824..1572849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS08185 (ABA10_08185) ylbE 1562124..1562363 (+) 240 WP_003232231.1 YlbE-like family protein -
  ABA10_RS08190 (ABA10_08190) ylbF 1562479..1562928 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ABA10_RS08195 (ABA10_08195) ylbG 1562983..1563255 (+) 273 WP_009967171.1 YlbG family protein -
  ABA10_RS08200 (ABA10_08200) rsmD 1563578..1564132 (+) 555 WP_047182572.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABA10_RS08205 (ABA10_08205) coaD 1564137..1564622 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ABA10_RS08210 (ABA10_08210) spoVV 1564633..1565859 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  ABA10_RS08215 (ABA10_08215) ylbK 1566040..1566822 (+) 783 WP_047182573.1 patatin family protein -
  ABA10_RS08220 (ABA10_08220) sepM 1566824..1567849 (+) 1026 WP_014476730.1 protease DdcP Regulator
  ABA10_RS08225 (ABA10_08225) tmcAL 1567866..1569113 (-) 1248 WP_047182574.1 nucleotidyltransferase -
  ABA10_RS08230 (ABA10_08230) - 1569110..1569295 (-) 186 WP_003232215.1 hypothetical protein -
  ABA10_RS08235 (ABA10_08235) ylbN 1569323..1569841 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  ABA10_RS21020 (ABA10_08240) rpmF 1569863..1570042 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  ABA10_RS08245 (ABA10_08245) gerR 1570188..1570769 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  ABA10_RS08250 (ABA10_08250) ylbP 1570826..1571308 (-) 483 WP_047182575.1 N-acetyltransferase -
  ABA10_RS08255 (ABA10_08255) panEA 1571468..1572364 (+) 897 WP_047182576.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37652.22 Da        Isoelectric Point: 5.9932

>NTDB_id=128951 ABA10_RS08220 WP_014476730.1 1566824..1567849(+) (sepM) [Bacillus subtilis strain UD1022]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSDMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=128951 ABA10_RS08220 WP_014476730.1 1566824..1567849(+) (sepM) [Bacillus subtilis strain UD1022]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGACCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAGATATGAAGATT
GTTCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(59-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402